Aliases for LOC254896 Gene

Subcategory (RNA class) for LOC254896 Gene

lncRNA

Aliases for LOC254896 Gene

  • Uncharacterized LOC254896 3
  • Novel Transcript 5
  • AC107959.4 5

External Ids for LOC254896 Gene

Previous GeneCards Identifiers for LOC254896 Gene

  • GC08U901466

Summaries for LOC254896 Gene

GeneCards Summary for LOC254896 Gene

LOC254896 (Uncharacterized LOC254896) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC254896 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC254896 Gene

Genomics for LOC254896 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC254896 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J023082 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 600.7 -0.3 -344 2.1 HNRNPL GATAD2A CTCF TFE3 KDM1A JUND LARP7 ZNF143 RBFOX2 PKNOX1 TNFRSF10C ENSG00000284956 LOC254896 ENSG00000253616 LOXL2 LOC101929237 LOC107986929 TNFRSF10B LOC286059
GH08J023089 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +8.4 8446 9.6 GATAD2A ATF7 IKZF1 PRDM1 ZSCAN4 PKNOX1 RXRB GABPA ZNF600 TOE1 POLR3D TNFRSF10C SORBS3 LOC100507071 CHMP7 R3HCC1 ENSG00000251034 PIWIL2 RHOBTB2 LOC107986929
GH08J023103 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 0.4 +19.3 19346 2.6 CTCF REST IKZF2 EZH2 EED RELB RUNX3 GATAD2B ZSCAN29 POLR2A TNFRSF10C ENSG00000284956 LOC254896 TNFRSF10D
GH08J023087 Enhancer 0.3 Ensembl 0.7 +3.1 3146 0.6 CEBPB ENSG00000253616 ENSG00000284956 LOC254896 LOC107986929 TNFRSF10C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC254896 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC254896 Gene

Genomic Locations for LOC254896 Gene
chr8:23,084,355-23,103,558
(GRCh38/hg38)
Size:
19,204 bases
Orientation:
Plus strand

Genomic View for LOC254896 Gene

Genes around LOC254896 on UCSC Golden Path with GeneCards custom track
LOC254896 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC254896 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC254896 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC254896 Gene

Proteins for LOC254896 Gene

Post-translational modifications for LOC254896 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC254896 Gene

Domains & Families for LOC254896 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC254896 Gene

Function for LOC254896 Gene

Phenotypes From GWAS Catalog for LOC254896 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC254896 Gene

Localization for LOC254896 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC254896 Gene

Pathways & Interactions for LOC254896 Gene

PathCards logo

SuperPathways for LOC254896 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC254896 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC254896 Gene

Drugs & Compounds for LOC254896 Gene

No Compound Related Data Available

Transcripts for LOC254896 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC254896 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000D61653_9606 lncRNA 1242 1

Ensembl: ENST00000397703 (view in UCSC) ,

URS000075E462_9606 lncRNA 1241 1

RefSeq: NR_046173,

LOC254896 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC254896 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC254896 Gene

No ASD Table

Relevant External Links for LOC254896 Gene

GeneLoc Exon Structure for
LOC254896

Expression for LOC254896 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC254896 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC254896

SOURCE GeneReport for Unigene cluster for LOC254896 Gene:

Hs.735240
genes like me logo Genes that share expression patterns with LOC254896: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC254896 Gene

Orthologs for LOC254896 Gene

Evolution for LOC254896 Gene

ENSEMBL:
Gene Tree for LOC254896 (if available)
TreeFam:
Gene Tree for LOC254896 (if available)

No data available for Orthologs for LOC254896 Gene

Paralogs for LOC254896 Gene

No data available for Paralogs for LOC254896 Gene

Variants for LOC254896 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC254896 Gene

SNP ID Clinical significance and condition Chr 08 pos Variation AA Info Type
732374 Likely Benign: not provided 23,103,164(+) G/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for LOC254896 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC254896 Gene

Variant ID Type Subtype PubMed ID
dgv12057n54 CNV loss 21841781
esv2736750 CNV deletion 23290073
esv2736752 CNV deletion 23290073
esv2759604 CNV loss 17122850
esv3572635 CNV loss 25503493
esv3616623 CNV loss 21293372
nsv1015967 CNV loss 25217958
nsv1017570 CNV gain 25217958
nsv1025279 CNV loss 25217958
nsv1025672 CNV gain 25217958
nsv1027718 CNV gain 25217958
nsv520728 CNV loss 19592680
nsv610775 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC254896 Gene

Disorders for LOC254896 Gene

Additional Disease Information for LOC254896

No disorders were found for LOC254896 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC254896 Gene

Publications for LOC254896 Gene

  1. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC254896 Gene

Products for LOC254896 Gene

Sources for LOC254896 Gene