Aliases for LOC221946 Gene

Subcategory (RNA class) for LOC221946 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LOC221946 Gene

  • Uncharacterized LOC221946 3
  • NONHSAG046851 92
  • Lnc-FSCN1-1 168

External Ids for LOC221946 Gene

Previous GeneCards Identifiers for LOC221946 Gene

  • GC07P005197
  • GC07U901091

Summaries for LOC221946 Gene

GeneCards Summary for LOC221946 Gene

LOC221946 (Uncharacterized LOC221946) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC221946 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC221946 Gene

Genomics for LOC221946 Gene

GeneHancer (GH) Regulatory Elements for LOC221946 Gene

Promoters and enhancers for LOC221946 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J005512 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 +0.1 91 3.2 FOXK2 ZBTB40 ZNF217 EP300 SIN3A NRF1 TCF12 POLR2G PHF8 SIX5 FBXL18 LOC221946 USP42 ANKRD61 RBAK lnc-FBXL18-2 RF00017-6015
GH07J005523 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +15.6 15644 11.1 RXRA HNRNPK ZBTB40 EP300 CTCF SIN3A NRF1 TCF12 POLR2G SP1 ACTB lnc-FBXL18-2 piR-38354 USP42 TNRC18 ANKRD61 RBAK RNF216P1 AP5Z1 KDELR2
GH07J005524 Enhancer 0.6 ENCODE 0.4 +9.5 9461 0.5 POLR2A NFIC POLR2G POU2F2 SUPT5H EBF1 JUND PBX3 PAX5 AGO1 FBXL18 lnc-FBXL18-2 LOC221946 RF00017-6015
GH07J005517 Enhancer 0.3 Ensembl 0.7 +3.0 3047 0.2 PRDM10 LOC221946 lnc-FBXL18-2 RF00017-6015
GH07J005519 Enhancer 0.3 dbSUPER 0.4 +5.8 5770 0.5 POLR2A CHD2 FBXL18 LOC221946 lnc-FBXL18-2 RF00017-6015
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC221946 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC221946 Gene

Genomic Locations for LOC221946 Gene
chr7:5,513,854-5,525,545
(GRCh38/hg38)
Size:
11,692 bases
Orientation:
Plus strand

Genomic View for LOC221946 Gene

Genes around LOC221946 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC221946 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC221946 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC221946 Gene

Proteins for LOC221946 Gene

Post-translational modifications for LOC221946 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC221946 Gene

Domains & Families for LOC221946 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC221946 Gene

Function for LOC221946 Gene

Phenotypes From GWAS Catalog for LOC221946 Gene

Phenotypes for LOC221946 Gene

GenomeRNAi human phenotypes for LOC221946:
genes like me logo Genes that share phenotypes with LOC221946: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC221946 Gene

Localization for LOC221946 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC221946 Gene

Pathways & Interactions for LOC221946 Gene

PathCards logo

SuperPathways for LOC221946 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC221946 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC221946 Gene

Drugs & Compounds for LOC221946 Gene

No Compound Related Data Available

Transcripts for LOC221946 Gene

mRNA/cDNA for LOC221946 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 NONCODE transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC221946 Gene

No ASD Table

Relevant External Links for LOC221946 Gene

GeneLoc Exon Structure for
LOC221946

Expression for LOC221946 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC221946 Gene

mRNA expression in normal human tissues for LOC221946 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC221946

SOURCE GeneReport for Unigene cluster for LOC221946 Gene:

Hs.385633
genes like me logo Genes that share expression patterns with LOC221946: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC221946 Gene

Orthologs for LOC221946 Gene

No data available for Orthologs and Evolution for LOC221946 Gene

Paralogs for LOC221946 Gene

No data available for Paralogs for LOC221946 Gene

Variants for LOC221946 Gene

Additional dbSNP identifiers (rs#s) for LOC221946 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC221946 Gene

Disorders for LOC221946 Gene

No disorders were found for LOC221946 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC221946 Gene

Publications for LOC221946 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 54

No data available for Mastermind for LOC221946 Gene

Products for LOC221946 Gene

Sources for LOC221946 Gene