Aliases for LOC202181 Gene

Aliases for LOC202181 Gene

  • SUMO Interacting Motifs Containing 1 Pseudogene 3

External Ids for LOC202181 Gene

Previous GeneCards Identifiers for LOC202181 Gene

  • GC05M177429
  • GC05M177895
  • GC05M177121
  • GC05M177166
  • GC05M177167
  • GC05U900520
  • GC05M176981
  • GC05M177045

Summaries for LOC202181 Gene

GeneCards Summary for LOC202181 Gene

LOC202181 (SUMO Interacting Motifs Containing 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC202181 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC202181 Gene

Genomics for LOC202181 Gene

GeneHancer (GH) Regulatory Elements for LOC202181 Gene

Promoters and enhancers for LOC202181 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J177671 Promoter 0.8 Ensembl 750.6 +0.6 576 2.6 NKRF KLF14 IKZF1 BACH1 IKZF2 LARP7 ZNF561 ZFX DPF2 ZBTB48 ENSG00000246596 LOC202181 lnc-FAM153A-3 B4GALT7 piR-60885-126
GH05J177676 Enhancer 0.4 Ensembl 0.4 -5.2 -5223 1.4 PKNOX1 FEZF1 ZNF843 PRDM6 B4GALT7 ENSG00000249849 LOC202181 lnc-FAM153A-3
GH05J177657 Enhancer 0.4 Ensembl 0.4 +13.4 13376 4.2 RFX1 CEBPB ZNF507 piR-60885-126 B4GALT7 FAM153CP ENSG00000246596 ENSG00000247679 NSD1 FAM153A TMED9 lnc-B4GALT7-3 LOC202181
GH05J177664 Enhancer 0.2 Ensembl 0.4 +6.9 6876 2.4 B4GALT7 FAM153CP TMED9 ENSG00000246596 LOC202181 lnc-FAM153A-3 piR-60885-126
GH05J177661 Enhancer 0.2 Ensembl 0.4 +10.2 10176 0.6 piR-60885-126 ENSG00000246596 LOC202181 lnc-FAM153A-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC202181 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC202181 Gene

Genomic Locations for LOC202181 Gene
chr5:177,618,500-177,672,277
(GRCh38/hg38)
Size:
53,778 bases
Orientation:
Minus strand
chr5:177,045,501-177,099,278
(GRCh37/hg19)
Size:
53,778 bases
Orientation:
Minus strand

Genomic View for LOC202181 Gene

Genes around LOC202181 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC202181 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC202181 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC202181 Gene

Proteins for LOC202181 Gene

Post-translational modifications for LOC202181 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC202181 Gene

Domains & Families for LOC202181 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC202181 Gene

Function for LOC202181 Gene

Phenotypes From GWAS Catalog for LOC202181 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC202181 Gene

Localization for LOC202181 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC202181 Gene

Pathways & Interactions for LOC202181 Gene

PathCards logo

SuperPathways for LOC202181 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC202181 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC202181 Gene

Drugs & Compounds for LOC202181 Gene

No Compound Related Data Available

Transcripts for LOC202181 Gene

mRNA/cDNA for LOC202181 Gene

(4) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC202181 Gene

No ASD Table

Relevant External Links for LOC202181 Gene

GeneLoc Exon Structure for
LOC202181

Expression for LOC202181 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC202181 Gene

SOURCE GeneReport for Unigene cluster for LOC202181 Gene:

Hs.189914
genes like me logo Genes that share expression patterns with LOC202181: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC202181 Gene

Orthologs for LOC202181 Gene

No data available for Orthologs and Evolution for LOC202181 Gene

Paralogs for LOC202181 Gene

No data available for Paralogs for LOC202181 Gene

Variants for LOC202181 Gene

Sequence variations from dbSNP and Humsavar for LOC202181 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000029423 -- 177,655,438(-) C/T intron_variant
rs1000116343 -- 177,649,456(-) A/C intron_variant
rs1000225549 -- 177,671,150(-) G/C intron_variant
rs1000464895 -- 177,655,790(-) A/G intron_variant
rs1000629956 -- 177,629,419(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC202181 Gene

Variant ID Type Subtype PubMed ID
esv1141121 CNV insertion 17803354
esv1540070 CNV insertion 17803354
esv3607690 CNV gain 21293372
nsv1132617 CNV duplication 24896259
nsv512863 CNV insertion 21212237
nsv964980 CNV duplication 23825009
nsv969020 CNV duplication 23825009
nsv969021 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC202181 Gene

Disorders for LOC202181 Gene

No disorders were found for LOC202181 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC202181 Gene

Publications for LOC202181 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  3. Isolation and characterization of novel CAG repeat containing genes expressed in human brain. (PMID: 10565538) Zühlke C … Schwinger E (DNA sequence : the journal of DNA sequencing and mapping 1999) 3 56

No data available for External Links for LOC202181 Gene

Products for LOC202181 Gene

Sources for LOC202181 Gene