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Aliases for LOC200772 Gene

Subcategory (RNA class) for LOC200772 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC200772 Gene

  • Uncharacterized LOC200772 3
  • Novel Transcript 5
  • AC104809.2 5

External Ids for LOC200772 Gene

Previous GeneCards Identifiers for LOC200772 Gene

  • GC02P239539
  • GC02P240398
  • GC02M241913
  • GC02U900510

Summaries for LOC200772 Gene

GeneCards Summary for LOC200772 Gene

LOC200772 (Uncharacterized LOC200772) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC200772 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC200772 Gene

Genomics for LOC200772 Gene

GeneHancer (GH) Regulatory Elements for LOC200772 Gene

Promoters and enhancers for LOC200772 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J240966 Promoter/Enhancer 0.7 FANTOM5 Ensembl 600.7 +1.3 1334 0.2 LOC200772 GC02M240925 MAB21L4 DUSP28 CROCC2
GH02J240967 Promoter 0.6 Ensembl 600.7 +0.6 550 0.2 BRD4 LOC200772 GC02M240925 CROCC2
GH02J240968 Enhancer 0.6 Ensembl 600.7 -1.5 -1450 0.2 GABPB1 ZNF614 ZGPAT KLF6 MXD4 DMAP1 MXD3 ZNF48 GC02M240925 LOC200772 ENSG00000223991 CROCC2
GH02J240959 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.8 +6.2 6185 4.3 ELF3 MNT POLR2A CEBPG RERE AHR MAFK SP1 PPARG SP5 ENSG00000223374 LOC200772 MAB21L4 SNED1 GC02M240925 CROCC2
GH02J240920 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +45.5 45496 3 NFIB ZBTB7A FOS NFIC HIC1 GLIS1 LOC200772 MAB21L4 SNED1 GPC1 CROCC2 GC02M240925
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC200772 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC200772 Gene

Genomic Locations for LOC200772 Gene
chr2:240,954,617-240,967,451
(GRCh38/hg38)
Size:
12,835 bases
Orientation:
Minus strand
chr2:241,894,034-241,906,868
(GRCh37/hg19)
Size:
12,835 bases
Orientation:
Minus strand

Genomic View for LOC200772 Gene

Genes around LOC200772 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC200772 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC200772 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC200772 Gene

Proteins for LOC200772 Gene

Post-translational modifications for LOC200772 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC200772 Gene

Domains & Families for LOC200772 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC200772 Gene

Function for LOC200772 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC200772 Gene

Localization for LOC200772 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC200772 Gene

Pathways & Interactions for LOC200772 Gene

PathCards logo

SuperPathways for LOC200772 Gene

No Data Available

Interacting Proteins for LOC200772 Gene

Gene Ontology (GO) - Biological Process for LOC200772 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC200772 Gene

Drugs & Compounds for LOC200772 Gene

No Compound Related Data Available

Transcripts for LOC200772 Gene

mRNA/cDNA for LOC200772 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC200772 Gene

Uncharacterized LOC200772:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC200772 Gene

No ASD Table

Relevant External Links for LOC200772 Gene

GeneLoc Exon Structure for
LOC200772

Expression for LOC200772 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC200772 Gene

mRNA differential expression in normal tissues according to GTEx for LOC200772 Gene

This gene is overexpressed in Spleen (x28.0), Whole Blood (x6.5), and Liver (x5.1).

SOURCE GeneReport for Unigene cluster for LOC200772 Gene:

Hs.647893
genes like me logo Genes that share expression patterns with LOC200772: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC200772 Gene

Orthologs for LOC200772 Gene

Evolution for LOC200772 Gene

ENSEMBL:
Gene Tree for LOC200772 (if available)
TreeFam:
Gene Tree for LOC200772 (if available)

No data available for Orthologs for LOC200772 Gene

Paralogs for LOC200772 Gene

No data available for Paralogs for LOC200772 Gene

Variants for LOC200772 Gene

Sequence variations from dbSNP and Humsavar for LOC200772 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000118795 -- 240,968,573(-) G/C upstream_transcript_variant
rs1000187672 -- 240,969,425(-) AGAGAGAG/AGAGAG upstream_transcript_variant
rs1000305174 -- 240,961,073(-) G/A/C intron_variant
rs1000573788 -- 240,960,935(-) G/A intron_variant
rs1000967416 -- 240,964,685(-) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC200772 Gene

Variant ID Type Subtype PubMed ID
esv2721963 CNV deletion 23290073
esv3381583 CNV duplication 20981092
nsv460167 CNV gain 19166990
nsv584861 CNV gain 21841781
nsv955295 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC200772 Gene

Disorders for LOC200772 Gene

No disorders were found for LOC200772 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC200772 Gene

Publications for LOC200772 Gene

No publications were found for LOC200772 Gene.

No data available for External Links for LOC200772 Gene

Products for LOC200772 Gene

Sources for LOC200772 Gene

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