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Aliases for LOC154761 Gene

Aliases for LOC154761 Gene

  • Family With Sequence Similarity 115, Member C Pseudogene 3
  • AC099548.2 5

External Ids for LOC154761 Gene

Previous GeneCards Identifiers for LOC154761 Gene

  • GC07M141755
  • GC07M142823
  • GC07U901200
  • GC07M142963
  • GC07M143343
  • GC07M143509

Summaries for LOC154761 Gene

GeneCards Summary for LOC154761 Gene

LOC154761 (Family With Sequence Similarity 115, Member C Pseudogene) is a Pseudogene.

Additional gene information for LOC154761 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC154761 Gene

Genomics for LOC154761 Gene

GeneHancer (GH) Regulatory Elements for LOC154761 Gene

Promoters and enhancers for LOC154761 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J143835 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 650.7 +0.3 332 2 CTCF HDAC1 PKNOX1 ATF1 RB1 SAP130 KLF14 ZIC2 ZNF335 ZFHX2 PIR33226 LOC154761 TCAF2P1
GH07J143378 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 29.5 +450.7 450739 15.9 MLX YBX1 YY1 ZNF213 ZNF143 SP3 MEF2D GLIS1 RCOR2 NR2C1 ZYX FAM131B CASP2 LOC154761 OR2A1 RN7SL535P EPHA1-AS1 EPHA1 TCAF2 CLCN1
GH07J143282 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 19.2 +550.4 550386 7.1 HDGF FOXA2 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 CASP2 PIR32183 LOC105375545 GC07M143288 TMEM139 LOC154761 RN7SL535P ZYX TRPV6
GH07J143262 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.1 +572.8 572820 2.8 HDGF SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B GSTK1 LOC154761 TCAF2 CASP2 TMEM139 LOC105375545 LOC105375546
GH07J144833 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.7 -998.6 -998597 3.2 DMAP1 YY1 ZNF213 ZNF143 SP3 NFYC ZNF610 GLIS1 NBN KDM1A TPK1 CTAGE8 LOC154761 OR2A1 GC07M144690
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC154761 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC154761 gene promoter:
  • FOXJ2 (long isoform)
  • FOXJ2
  • FOXL1
  • AML1a
  • AREB6
  • MEF-2A
  • aMEF-2
  • E47
  • NF-kappaB
  • NF-kappaB1

Genomic Locations for LOC154761 Gene

Genomic Locations for LOC154761 Gene
chr7:143,761,790-143,836,933
(GRCh38/hg38)
Size:
75,144 bases
Orientation:
Minus strand
chr7:143,339,348-143,534,026
(GRCh37/hg19)
Size:
194,679 bases
Orientation:
Minus strand

Genomic View for LOC154761 Gene

Genes around LOC154761 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC154761 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC154761 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC154761 Gene

Proteins for LOC154761 Gene

Post-translational modifications for LOC154761 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC154761 Gene

Domains & Families for LOC154761 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC154761 Gene

Function for LOC154761 Gene

Phenotypes From GWAS Catalog for LOC154761 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC154761 Gene

Localization for LOC154761 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC154761 Gene

Pathways & Interactions for LOC154761 Gene

SuperPathways for LOC154761 Gene

No Data Available

Interacting Proteins for LOC154761 Gene

Gene Ontology (GO) - Biological Process for LOC154761 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC154761 Gene

Drugs & Compounds for LOC154761 Gene

No Compound Related Data Available

Transcripts for LOC154761 Gene

mRNA/cDNA for LOC154761 Gene

(5) Additional mRNA sequences :
(384) Selected AceView cDNA sequences:
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC154761 Gene

Family with sequence similarity 115, member C pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC154761 Gene

No ASD Table

Relevant External Links for LOC154761 Gene

GeneLoc Exon Structure for
LOC154761

Expression for LOC154761 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC154761 Gene

mRNA differential expression in normal tissues according to GTEx for LOC154761 Gene

This gene is overexpressed in Whole Blood (x5.0).

SOURCE GeneReport for Unigene cluster for LOC154761 Gene:

Hs.716689
genes like me logo Genes that share expression patterns with LOC154761: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC154761 Gene

Orthologs for LOC154761 Gene

Evolution for LOC154761 Gene

ENSEMBL:
Gene Tree for LOC154761 (if available)
TreeFam:
Gene Tree for LOC154761 (if available)

No data available for Orthologs for LOC154761 Gene

Paralogs for LOC154761 Gene

No data available for Paralogs for LOC154761 Gene

Variants for LOC154761 Gene

Sequence variations from dbSNP and Humsavar for LOC154761 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1003663643 -- 143,818,511(-) AAAAAAAA/AAAAAAAAA intron_variant
rs1004101200 -- 143,817,032(-) A/G intron_variant
rs1005705740 -- 143,821,209(-) A/T intron_variant
rs1005779205 -- 143,818,612(-) T/C intron_variant
rs1006076885 -- 143,811,921(-) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC154761 Gene

Variant ID Type Subtype PubMed ID
nsv971554 CNV duplication 23825009
nsv949973 CNV deletion 24416366
nsv824359 CNV gain 20364138
nsv824358 CNV gain 20364138
nsv824357 CNV loss 20364138
nsv8227 CNV gain+loss 18304495
nsv7408 OTHER inversion 18451855
nsv608691 CNV loss 21841781
nsv608690 CNV loss 21841781
nsv608689 CNV loss 21841781
nsv608684 CNV loss 21841781
nsv608682 CNV gain 21841781
nsv522225 CNV gain 19592680
nsv514455 CNV gain+loss 21397061
nsv471645 CNV gain+loss 15918152
nsv469570 CNV gain+loss 16826518
nsv442210 CNV gain 18776908
nsv428188 CNV gain+loss 18775914
nsv17 OTHER inversion 15895083
nsv16 OTHER inversion 15895083
nsv1161656 CNV duplication 26073780
nsv1161631 CNV duplication 26073780
nsv1153668 CNV duplication 26484159
nsv1145166 CNV deletion 24896259
nsv1140255 OTHER inversion 24896259
nsv1076960 CNV deletion 25765185
nsv1034865 CNV gain 25217958
nsv1033465 CNV gain 25217958
nsv1029557 CNV gain+loss 25217958
nsv1028513 CNV gain+loss 25217958
nsv1027829 CNV gain+loss 25217958
nsv1027488 CNV gain 25217958
nsv1023621 CNV loss 25217958
nsv1022459 CNV gain 25217958
nsv1016831 CNV gain 25217958
esv3891220 CNV loss 25118596
esv3584556 CNV gain 24956385
esv33716 CNV gain 17666407
esv29816 CNV gain+loss 19812545
esv2761375 CNV gain 21179565
esv2761113 CNV gain+loss 21179565
esv2759570 CNV gain+loss 17122850
esv2422489 CNV duplication 17116639
esv1682998 OTHER inversion 17803354
dgv6723n100 CNV loss 25217958
dgv6722n100 CNV loss 25217958
dgv6721n100 CNV gain+loss 25217958
dgv6720n100 CNV gain+loss 25217958
dgv6719n100 CNV loss 25217958
dgv6718n100 CNV gain 25217958
dgv6717n100 CNV gain+loss 25217958
dgv6716n100 CNV gain 25217958
dgv6715n100 CNV gain+loss 25217958
dgv6714n100 CNV gain+loss 25217958
dgv6712n100 CNV loss 25217958
dgv6711n100 CNV gain 25217958
dgv6710n100 CNV loss 25217958
dgv6709n100 CNV loss 25217958
dgv6706n100 CNV loss 25217958
dgv6702n100 CNV gain 25217958
dgv6700n100 CNV gain 25217958
dgv252n111 CNV duplication 26073780
dgv251n111 CNV duplication 26073780
dgv250n111 CNV duplication 26073780

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC154761 Gene

Disorders for LOC154761 Gene

Additional Disease Information for LOC154761

No disorders were found for LOC154761 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC154761 Gene

Publications for LOC154761 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC154761 Gene

Sources for LOC154761 Gene

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