Aliases for LOC154449 Gene

Subcategory (RNA class) for LOC154449 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LOC154449 Gene

  • Uncharacterized LOC154449 3
  • Novel Transcript 5
  • HSALNG0055428 169
  • NONHSAG045509 94
  • AL109910.1 5
  • Lnc-DLL1-1 170

External Ids for LOC154449 Gene

Previous GeneCards Identifiers for LOC154449 Gene

  • GC06M169758
  • GC06M170419
  • GC06M170481
  • GC06M170406
  • GC06M170564

Summaries for LOC154449 Gene

GeneCards Summary for LOC154449 Gene

LOC154449 (Uncharacterized LOC154449) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC154449 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC154449 Gene

Genomics for LOC154449 Gene

GeneHancer (GH) Regulatory Elements for LOC154449 Gene

Promoters and enhancers for LOC154449 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J170264 Enhancer 0.3 Ensembl dbSUPER 750.6 -1.8 -1768 0.2 LOC154449 FAM120B DLL1 piR-35920
GH06J170234 Enhancer 0.6 Ensembl CraniofacialAtlas 12.4 +27.6 27627 2.6 ZBTB33 USF1 NRF1 HDAC2 LOC154449 FAM120B DLL1 ENSG00000232640 LOC285804 lnc-FAM120B-7 RPL12P23
GH06J170265 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 0.6 -3.3 -3296 1.6 CTCF FOXA1 RAD21 MNT SP1 CREB1 FOXA2 PKNOX1 JUND TGIF2 LOC285804 ENSG00000261003 LOC154449 piR-35920
GH06J170271 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -9.5 -9452 1.6 MYC ETV6 MAX MLLT1 CREM IKZF1 TRIM22 IKZF2 CBFB EED LINC01624 piR-35920 LOC285804 FAM120B LOC154449
GH06J170268 Enhancer 0.9 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 -6.8 -6752 2.3 ZIC2 SCRT2 LOC285804 piR-35920 LOC154449
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC154449 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC154449 gene promoter:
  • E47
  • ITF-2
  • MRF-2
  • NF-kappaB1
  • POU2F1
  • POU2F1a
  • RelA
  • SRY
  • Tal-1
  • Tal-1beta

Genomic Locations for LOC154449 Gene

Genomic Locations for LOC154449 Gene
chr6:170,207,242-170,262,733
(GRCh38/hg38)
Size:
55,492 bases
Orientation:
Minus strand
chr6:170,563,422-170,571,657
(GRCh37/hg19)
Size:
8,236 bases
Orientation:
Minus strand

Genomic View for LOC154449 Gene

Genes around LOC154449 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC154449 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC154449 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC154449 Gene

Proteins for LOC154449 Gene

Post-translational modifications for LOC154449 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC154449 Gene

Domains & Families for LOC154449 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC154449 Gene

Function for LOC154449 Gene

Phenotypes From GWAS Catalog for LOC154449 Gene

Phenotypes for LOC154449 Gene

genes like me logo Genes that share phenotypes with LOC154449: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC154449 Gene

Localization for LOC154449 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC154449 Gene

Pathways & Interactions for LOC154449 Gene

PathCards logo

SuperPathways for LOC154449 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC154449 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC154449 Gene

Drugs & Compounds for LOC154449 Gene

No Compound Related Data Available

Transcripts for LOC154449 Gene

mRNA/cDNA for LOC154449 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(3) LNCipedia transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC154449 Gene

No ASD Table

Relevant External Links for LOC154449 Gene

GeneLoc Exon Structure for
LOC154449

Expression for LOC154449 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC154449 Gene

SOURCE GeneReport for Unigene cluster for LOC154449 Gene:

Hs.447751
genes like me logo Genes that share expression patterns with LOC154449: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC154449 Gene

Orthologs for LOC154449 Gene

Evolution for LOC154449 Gene

ENSEMBL:
Gene Tree for LOC154449 (if available)
TreeFam:
Gene Tree for LOC154449 (if available)

No data available for Orthologs for LOC154449 Gene

Paralogs for LOC154449 Gene

No data available for Paralogs for LOC154449 Gene

Variants for LOC154449 Gene

Sequence variations from dbSNP and Humsavar for LOC154449 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000017899 -- 170,260,448(-) C/T intron_variant
rs1000425621 -- 170,257,983(-) A/G intron_variant
rs1000910334 -- 170,261,363(-) C/A intron_variant
rs1000983441 -- 170,261,191(-) C/G/T intron_variant
rs1001644480 -- 170,261,709(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC154449 Gene

Variant ID Type Subtype PubMed ID
esv1488056 CNV insertion 17803354
esv2659179 CNV deletion 23128226
esv2733563 CNV deletion 23290073
esv2733601 CNV deletion 23290073
esv2733602 CNV deletion 23290073
esv3611732 CNV loss 21293372
esv998939 CNV insertion 20482838
nsv1112450 CNV deletion 24896259
nsv1133017 OTHER inversion 24896259
nsv1150609 OTHER inversion 26484159
nsv473138 CNV novel sequence insertion 20440878
nsv509177 CNV insertion 20534489
nsv518303 CNV loss 19592680
nsv523383 CNV loss 19592680
nsv823936 CNV gain 20364138

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC154449 Gene

Disorders for LOC154449 Gene

No disorders were found for LOC154449 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC154449 Gene

Publications for LOC154449 Gene

  1. Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus. (PMID: 25338677) Kariuki SN … Niewold TB (Genes and immunity 2015) 3 56
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 56
  3. A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci. (PMID: 21980299) Bradfield JP … Hakonarson H (PLoS genetics 2011) 3 56

No data available for External Links for LOC154449 Gene

Products for LOC154449 Gene

Sources for LOC154449 Gene