Aliases for LOC153684 Gene

Subcategory (RNA class) for LOC153684 Gene

lncRNA

Number of RNA Genes sources:

0 / 14

Aliases for LOC153684 Gene

  • Uncharacterized LOC153684 3

External Ids for LOC153684 Gene

Previous GeneCards Identifiers for LOC153684 Gene

  • GC05P043345
  • GC05P044218
  • GC05P043041
  • GC05U900279
  • GC05P043087
  • GC05P043077

Summaries for LOC153684 Gene

GeneCards Summary for LOC153684 Gene

LOC153684 (Uncharacterized LOC153684) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC153684 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC153684 Gene

Genomics for LOC153684 Gene

GeneHancer (GH) Regulatory Elements for LOC153684 Gene

Promoters and enhancers for LOC153684 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J043033 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.1 -3107 11.4 ZBTB40 CTCF ZSCAN5C SIN3A NRF1 TCF12 POLR2G GTF2E2 PHB2 ZFX ZNF131 ENSG00000249492 AMD1P3 ENSG00000248240 EEF1A1P19 ANXA2R RPL29P12 ENSG00000215068 ENSG00000272382 PAIP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC153684 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC153684 Gene

Genomic Locations for LOC153684 Gene
chr5:43,042,134-43,045,268
(GRCh38/hg38)
Size:
3,135 bases
Orientation:
Plus strand
chr5:43,041,677-43,045,492
(GRCh37/hg19)
Size:
3,816 bases
Orientation:
Plus strand

Genomic View for LOC153684 Gene

Genes around LOC153684 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC153684 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC153684 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC153684 Gene

Proteins for LOC153684 Gene

Post-translational modifications for LOC153684 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC153684 Gene

Domains & Families for LOC153684 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC153684 Gene

Function for LOC153684 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC153684 Gene

Localization for LOC153684 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC153684 Gene

Pathways & Interactions for LOC153684 Gene

PathCards logo

SuperPathways for LOC153684 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC153684 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC153684 Gene

Drugs & Compounds for LOC153684 Gene

No Compound Related Data Available

Transcripts for LOC153684 Gene

mRNA/cDNA for LOC153684 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC153684 Gene

No ASD Table

Relevant External Links for LOC153684 Gene

GeneLoc Exon Structure for
LOC153684

Expression for LOC153684 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC153684 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC153684

SOURCE GeneReport for Unigene cluster for LOC153684 Gene:

Hs.259625
genes like me logo Genes that share expression patterns with LOC153684: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC153684 Gene

Orthologs for LOC153684 Gene

No data available for Orthologs and Evolution for LOC153684 Gene

Paralogs for LOC153684 Gene

No data available for Paralogs for LOC153684 Gene

Variants for LOC153684 Gene

Additional dbSNP identifiers (rs#s) for LOC153684 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC153684 Gene

Variant ID Type Subtype PubMed ID
nsv1029288 CNV loss 25217958
nsv327225 CNV insertion 16902084
nsv462126 CNV gain 19166990
nsv597925 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC153684 Gene

Disorders for LOC153684 Gene

No disorders were found for LOC153684 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC153684 Gene

Publications for LOC153684 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LOC153684 Gene

Products for LOC153684 Gene

Sources for LOC153684 Gene