Aliases for LOC153684 Gene

Data sources for LOC153684 Gene:

RNA type for LOC153684 Gene

lncRNA

Aliases for LOC153684 Gene

External Ids for LOC153684 Gene

Previous GeneCards Identifiers for LOC153684 Gene

  • GC05P043345
  • GC05P044218
  • GC05P043041
  • GC05U900279
  • GC05P043087
  • GC05P043077
  • GC05P043044
  • GC05P043276
  • GC05P043313

Summaries for LOC153684 Gene

GeneCards Summary for LOC153684 Gene

LOC153684 (Uncharacterized LOC153684) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC153684 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC153684 Gene

Genomics for LOC153684 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC153684 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J043033 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 261.3 -1.9 -1944 11.5 BCLAF1 ZNF207 MYC ZNF654 NCOR1 IKZF1 ZNF600 ZNF580 ZNF592 ZMYM3 ZNF131 LOC153684 ENSG00000249492 TMEM267 ENSG00000248240 EEF1A1P19 ANXA2R RPL29P12 PAIP1 ENSG00000272382
GH05J043073 Enhancer 1.3 Ensembl ENCODE dbSUPER 30.7 +34.0 34001 2.8 ZNF654 NCOR1 MYC IKZF1 ZNF592 NFIC REST CTCF SMAD5 TRIM22 piR-43644 piR-52976-002 piR-53360-008 ZNF131 LOC153684 ANXA2R TMEM267 ENSG00000249492 SERBP1P6 RPL29P12
GH05J043191 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 19 +152.1 152070 2.9 IKZF1 ZNF600 ZNF580 CEBPA ZNF223 ZIC2 ZBTB10 CEBPB ZNF639 ZNF341 NIM1K lnc-NIM1K-3 lnc-HMGCS1-3 ZNF131 TMEM267 EEF1A1P19 ENSG00000249492 RPL29P12 C5orf34 LOC153684
GH05J043006 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 13.8 -31.2 -31199 6.4 BCLAF1 SP1 ZNF207 MYC NCOR1 IKZF1 ZNF600 SSRP1 ZNF580 ZNF592 HSALNG0041485 lnc-ZNF131-11 ZNF131 ANXA2R LOC153684 ENSG00000249492 TMEM267 ENSG00000271788 AMD1P3 GHR
GH05J043015 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 13.9 -22.0 -22049 6.6 BCLAF1 SP1 ZNF207 ZNF600 ZNF580 ZMYM3 POLR2A CEBPA ZNF10 BRCA1 ENSG00000251131 ENSG00000272382 HSALNG0041488 LOC105374748 piR-35544 piR-51211 ZNF131 ANXA2R TMEM267 LOC153684
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC153684 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC153684 Gene

Latest Assembly
chr5:43,040,999-43,057,113
(GRCh38/hg38)
Size:
16,115 bases
Orientation:
Plus strand

Previous Assembly
chr5:43,042,236-43,045,370
(GRCh37/hg19 by Entrez Gene)
Size:
3,135 bases
Orientation:
Plus strand

chr5:43,041,677-43,045,492
(GRCh37/hg19 by Ensembl)
Size:
3,816 bases
Orientation:
Plus strand

Genomic View for LOC153684 Gene

Genes around LOC153684 on UCSC Golden Path with GeneCards custom track
LOC153684 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC153684 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC153684 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC153684 Gene

Proteins for LOC153684 Gene

Post-translational modifications for LOC153684 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC153684 Gene

Domains & Families for LOC153684 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC153684 Gene

Function for LOC153684 Gene

Phenotypes From GWAS Catalog for LOC153684 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC153684 Gene

Localization for LOC153684 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC153684 Gene

Pathways & Interactions for LOC153684 Gene

PathCards logo

SuperPathways for LOC153684 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC153684 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC153684 Gene

Drugs & Compounds for LOC153684 Gene

No Compound Related Data Available

Transcripts for LOC153684 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC153684 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000492575_9606 lncRNA 1221 4

Ensembl: ENST00000451894 (view in UCSC) ,

LncBook: HSALNT0087207,

LNCipedia: lnc-ZNF131-1:1, lnc-ZNF131-1:9,

NONCODE: NONHSAT101267.2,

URS00004E06A7_9606 lncRNA 402 3

Ensembl: ENST00000505541 (view in UCSC) ,

LNCipedia: lnc-ZNF131-1:2,

NONCODE: NONHSAT101268.2,

URS0000EF60F0_9606 lncRNA 2454 1

Ensembl: ENST00000669102 (view in UCSC) ,

URS000075AC8D_9606 lncRNA 2260 1

RefSeq: NR_015447,

URS0000EEFE24_9606 lncRNA 1866 1

Ensembl: ENST00000659040 (view in UCSC) ,

LOC153684 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC153684 Gene

6 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC153684 Gene

No ASD Table

Relevant External Links for LOC153684 Gene

GeneLoc Exon Structure for
LOC153684

Expression for LOC153684 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC153684 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC153684

SOURCE GeneReport for Unigene cluster for LOC153684 Gene:

Hs.259625
genes like me logo Genes that share expression patterns with LOC153684: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC153684 Gene

Orthologs for LOC153684 Gene

Evolution for LOC153684 Gene

ENSEMBL:
Gene Tree for LOC153684 (if available)
TreeFam:
Gene Tree for LOC153684 (if available)

No data available for Orthologs for LOC153684 Gene

Paralogs for LOC153684 Gene

No data available for Paralogs for LOC153684 Gene

Variants for LOC153684 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC153684 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC153684 Gene

Variant ID Type Subtype PubMed ID
nsv1029288 CNV loss 25217958
nsv327225 CNV insertion 16902084
nsv462126 CNV gain 19166990
nsv597925 CNV gain 21841781

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC153684 Gene

Disorders for LOC153684 Gene

Additional Disease Information for LOC153684

Open Targets Platform
Open Targets Platform

No disorders were found for LOC153684 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC153684 Gene

Publications for LOC153684 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC153684 Gene

Products for LOC153684 Gene

Sources for LOC153684 Gene