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Aliases for LOC153684 Gene

Subcategory (RNA class) for LOC153684 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC153684 Gene

  • Uncharacterized LOC153684 3
  • AC025171.2 5

External Ids for LOC153684 Gene

Previous GeneCards Identifiers for LOC153684 Gene

  • GC05P043345
  • GC05P044218
  • GC05U900279
  • GC05P043087
  • GC05P043077

Summaries for LOC153684 Gene

GeneCards Summary for LOC153684 Gene

LOC153684 (Uncharacterized LOC153684) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC153684 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC153684 Gene

Genomics for LOC153684 Gene

GeneHancer (GH) Regulatory Elements for LOC153684 Gene

Promoters and enhancers for LOC153684 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I043191 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 19 +151.6 151554 2.8 CLOCK ARID4B ZNF2 ZBTB7B FOS KLF13 SP3 NFYC REST RFX3 NIM1K ZNF131 TMEM267 EEF1A1P19 ENSG00000249492 RPL29P12 C5orf34 LOC153684 AMD1P3 PAIP1
GH05I043033 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.4 -3.1 -3102 10.3 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZFP41 ZNF610 ZNF585B GLIS1 NBN ANXA2R ZNF131 ENSG00000249492 TMEM267 EEF1A1P19 AMD1P3 RPL29P12 LOC153684 ENSG00000272382 PAIP1
GH05I043015 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 13.9 -22.6 -22625 6.6 PKNOX1 SMAD1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 GC05M043024 LOC105374748 PIR45210 ANXA2R ZNF131 TMEM267 LOC153684 ENSG00000248240 ENSG00000249492 ENSG00000271788
GH05I043006 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 13.8 -32.0 -32022 5.5 ZFP64 IRF4 YY1 ZNF213 ZNF143 MEF2D SSRP1 ZNF610 GLIS1 RCOR2 ZNF131 ANXA2R LOC153684 ENSG00000249492 TMEM267 ENSG00000271788 AMD1P3 GHR PIR61621
GH05I043554 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.7 +514.8 514799 3.2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF143 SP3 REST SMARCB1 PAIP1 NNT C5orf34 ENSG00000249492 ENSG00000248240 EEF1A1P19 NNT-AS1 RPL29P12 FGF10-AS1 LOC153684
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC153684 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC153684 Gene

Genomic Locations for LOC153684 Gene
chr5:43,041,575-43,045,390
(GRCh38/hg38)
Size:
3,816 bases
Orientation:
Plus strand
chr5:43,041,677-43,045,492
(GRCh37/hg19)

Genomic View for LOC153684 Gene

Genes around LOC153684 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC153684 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC153684 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC153684 Gene

Proteins for LOC153684 Gene

Post-translational modifications for LOC153684 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC153684 Gene

Domains & Families for LOC153684 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC153684 Gene

Function for LOC153684 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC153684 Gene

Localization for LOC153684 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC153684 Gene

Pathways & Interactions for LOC153684 Gene

SuperPathways for LOC153684 Gene

No Data Available

Interacting Proteins for LOC153684 Gene

Gene Ontology (GO) - Biological Process for LOC153684 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC153684 Gene

Drugs & Compounds for LOC153684 Gene

No Compound Related Data Available

Transcripts for LOC153684 Gene

Unigene Clusters for LOC153684 Gene

Uncharacterized LOC153684:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC153684 Gene

No ASD Table

Relevant External Links for LOC153684 Gene

GeneLoc Exon Structure for
LOC153684

Expression for LOC153684 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC153684 Gene

SOURCE GeneReport for Unigene cluster for LOC153684 Gene:

Hs.259625
genes like me logo Genes that share expression patterns with LOC153684: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC153684 Gene

Orthologs for LOC153684 Gene

Evolution for LOC153684 Gene

ENSEMBL:
Gene Tree for LOC153684 (if available)
TreeFam:
Gene Tree for LOC153684 (if available)

No data available for Orthologs for LOC153684 Gene

Paralogs for LOC153684 Gene

No data available for Paralogs for LOC153684 Gene

Variants for LOC153684 Gene

Sequence variations from dbSNP and Humsavar for LOC153684 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000180747 -- 43,042,464(+) AAAGA/A non_coding_transcript_variant
rs1001091892 -- 43,041,100(+) C/T upstream_transcript_variant
rs1001274196 -- 43,043,456(+) T/C non_coding_transcript_variant
rs1001409958 -- 43,043,245(+) G/C non_coding_transcript_variant
rs1002275105 -- 43,045,641(+) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC153684 Gene

Variant ID Type Subtype PubMed ID
nsv1029288 CNV loss 25217958
nsv327225 CNV insertion 16902084
nsv462126 CNV gain 19166990
nsv597925 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC153684 Gene

Disorders for LOC153684 Gene

Additional Disease Information for LOC153684

No disorders were found for LOC153684 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC153684 Gene

Publications for LOC153684 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC153684 Gene

Sources for LOC153684 Gene

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