LOC150935 Gene (RNA Gene)

Uncharacterized LOC150935

GC02P239762
GIFtS:
8
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Aliases for LOC150935 Gene

Subcategory (RNA class) for LOC150935 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC150935 Gene

  • Uncharacterized LOC150935 3
  • Lnc-GPC1-2 165

External Ids for LOC150935 Gene

Previous GeneCards Identifiers for LOC150935 Gene

  • GC02P238625
  • GC02P239257
  • GC02P240600
  • GC02U900679
  • GC02P240349
  • GC02P240685

Summaries for LOC150935 Gene

GeneCards Summary for LOC150935 Gene

LOC150935 (Uncharacterized LOC150935) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC150935 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC150935 Gene

Genomics for LOC150935 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC150935 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J239762 Enhancer 0.3 Ensembl 600.7 +0.3 305 1.3 SMARCA4 RAD21 ENSG00000220256 LOC150935 RF00017-3478 LOC401040 NDUFA10
GH02J239756 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.4 -5.3 -5299 3.9 CREB1 ZNF629 RFX1 ZIC2 POLR2A ZNF600 KLF9 RAD21 SP1 BRCA1 ENSG00000220256 HDAC4-AS1 HDAC4 LOC150935 HSALNG0023533 LOC401040 NDUFA10
GH02J239751 Enhancer 0.6 ENCODE CraniofacialAtlas 0.4 -11.1 -11120 0.9 IKZF1 SAFB POLR2A HSALNG0023533 ENSG00000220256 LOC150935 LOC401040 NDUFA10
GH02J239747 Enhancer 0.4 Ensembl 0.4 -15.7 -15659 2.4 ZEB1 EZH2 KLF1 EGR2 HSALNG0023533 ENSG00000220256 LOC150935 LOC401040 NDUFA10
GH02J239789 Enhancer 0.5 Ensembl 0.3 +28.5 28540 3.2 ATF7 NR2F2 POLR2A EZH2 ATF2 JUND ENSG00000220256 LOC401040 RF00017-3478 LOC150935 NDUFA10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC150935 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC150935 Gene

Genomic Locations for LOC150935 Gene
chr2:239,762,860-239,800,664
(GRCh38/hg38)
Size:
37,805 bases
Orientation:
Plus strand
chr2:240,684,554-240,724,577
(GRCh37/hg19)
Size:
40,024 bases
Orientation:
Plus strand

Genomic View for LOC150935 Gene

Genes around LOC150935 on UCSC Golden Path with GeneCards custom track
LOC150935 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC150935 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC150935 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC150935 Gene

Proteins for LOC150935 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC150935 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC150935 Gene

Domains & Families for LOC150935 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC150935 Gene

Function for LOC150935 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC150935 Gene

Phenotypes for LOC150935 Gene

GenomeRNAi human phenotypes for LOC150935:
genes like me logo Genes that share phenotypes with LOC150935: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC150935 Gene

Localization for LOC150935 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC150935 Gene

Pathways & Interactions for LOC150935 Gene

PathCards logo

SuperPathways for LOC150935 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC150935 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC150935 Gene

Drugs & Compounds for LOC150935 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC150935 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC150935 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DDBB_9606 lncRNA 1019 2

RefSeq: NR_037808,

LNCipedia: lnc-GPC1-2:3,

URS00008B6D3B_9606 lncRNA 1017 1

LNCipedia: lnc-GPC1-2:1,

LOC150935 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC150935 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC150935 Gene

No ASD Table

Relevant External Links for LOC150935 Gene

GeneLoc Exon Structure for
LOC150935

Expression for LOC150935 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC150935 Gene

mRNA expression in normal human tissues for LOC150935 Gene
mRNA expression by GTEx for LOC150935 Gene

mRNA differential expression in normal tissues according to GTEx for LOC150935 Gene

This gene is overexpressed in Brain - Cortex (x9.0), Brain - Frontal Cortex (BA9) (x7.0), Brain - Anterior cingulate cortex (BA24) (x6.3), and Testis (x6.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC150935

SOURCE GeneReport for Unigene cluster for LOC150935 Gene:

Hs.555582
genes like me logo Genes that share expression patterns with LOC150935: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC150935 Gene

Orthologs for LOC150935 Gene

No data available for Orthologs and Evolution for LOC150935 Gene

Paralogs for LOC150935 Gene

No data available for Paralogs for LOC150935 Gene

Variants for LOC150935 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC150935 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC150935 Gene

Variant ID Type Subtype PubMed ID
esv24718 CNV gain 19812545
nsv1006293 CNV gain 25217958
nsv508898 CNV insertion 20534489
nsv818119 CNV gain 17921354
nsv821935 CNV gain 20364138
nsv834583 CNV loss 17160897
nsv997288 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC150935 Gene

Disorders for LOC150935 Gene

No disorders were found for LOC150935 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC150935 Gene

Publications for LOC150935 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC150935 Gene

Products for LOC150935 Gene

Sources for LOC150935 Gene