Aliases for LOC150935 Gene

Data sources for LOC150935 Gene:

Subcategory (RNA class) for LOC150935 Gene

lncRNA

Aliases for LOC150935 Gene

External Ids for LOC150935 Gene

Previous GeneCards Identifiers for LOC150935 Gene

  • GC02P238625
  • GC02P239257
  • GC02P240600
  • GC02U900679
  • GC02P240349
  • GC02P240685

Summaries for LOC150935 Gene

GeneCards Summary for LOC150935 Gene

LOC150935 (Uncharacterized LOC150935) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC150935 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC150935 Gene

Genomics for LOC150935 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC150935 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J239763 Enhancer 0.3 Ensembl 250.7 +0.6 642 1 CTCF RAD21 ENSG00000220256 LOC150935 RF00017-3476 LOC401040 NDUFA10
GH02J239762 Enhancer 0.2 Ensembl 250.7 -0.2 -158 0.2 ENSG00000220256 LOC150935 HSALNG0023533 LOC401040 NDUFA10
GH02J239756 Enhancer 0.8 FANTOM5 ENCODE CraniofacialAtlas 0.4 -5.8 -5762 1.9 BMI1 RFX1 TRIM28 POLR2A RAD21 ENSG00000220256 HDAC4 LOC150935 HSALNG0023533 LOC401040 NDUFA10
GH02J239751 Enhancer 0.6 ENCODE CraniofacialAtlas 0.4 -11.1 -11119 0.9 SAFB POLR2A IKZF1 HSALNG0023533 LOC150935 LOC401040 NDUFA10
GH02J239747 Enhancer 0.4 Ensembl 0.4 -15.5 -15458 2 ZEB1 KLF1 EGR2 EZH2 HSALNG0023533 LOC150935 LOC401040 NDUFA10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC150935 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC150935 Gene

Latest Assembly
chr2:239,762,859-239,800,664
(GRCh38/hg38)
Size:
37,806 bases
Orientation:
Plus strand

Previous Assembly
chr2:240,684,554-240,722,358
(GRCh37/hg19 by Entrez Gene)
Size:
37,805 bases
Orientation:
Plus strand

Genomic View for LOC150935 Gene

Genes around LOC150935 on UCSC Golden Path with GeneCards custom track
LOC150935 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC150935 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC150935 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC150935 Gene

Proteins for LOC150935 Gene

Post-translational modifications for LOC150935 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC150935 Gene

Domains & Families for LOC150935 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC150935 Gene

Function for LOC150935 Gene

Phenotypes From GWAS Catalog for LOC150935 Gene

Phenotypes for LOC150935 Gene

genes like me logo Genes that share phenotypes with LOC150935: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC150935 Gene

Localization for LOC150935 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC150935 Gene

Pathways & Interactions for LOC150935 Gene

PathCards logo

SuperPathways for LOC150935 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC150935 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC150935 Gene

Drugs & Compounds for LOC150935 Gene

No Compound Related Data Available

Transcripts for LOC150935 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC150935 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DDBB_9606 lncRNA 1022 2

RefSeq: NR_037808,

LNCipedia: lnc-GPC1-2:3,

URS00008B6D3B_9606 lncRNA 1020 1

LNCipedia: lnc-GPC1-2:1,

LOC150935 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC150935 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC150935 Gene

No ASD Table

Relevant External Links for LOC150935 Gene

GeneLoc Exon Structure for
LOC150935

Expression for LOC150935 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC150935 Gene

mRNA differential expression in normal tissues according to GTEx for LOC150935 Gene

This gene is overexpressed in Brain - Cortex (x9.0), Brain - Frontal Cortex (BA9) (x7.0), Brain - Anterior cingulate cortex (BA24) (x6.3), and Testis (x6.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC150935

SOURCE GeneReport for Unigene cluster for LOC150935 Gene:

Hs.555582
genes like me logo Genes that share expression patterns with LOC150935: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC150935 Gene

Orthologs for LOC150935 Gene

No data available for Orthologs and Evolution for LOC150935 Gene

Paralogs for LOC150935 Gene

No data available for Paralogs for LOC150935 Gene

Variants for LOC150935 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC150935 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC150935 Gene

Variant ID Type Subtype PubMed ID
esv24718 CNV gain 19812545
nsv1006293 CNV gain 25217958
nsv508898 CNV insertion 20534489
nsv818119 CNV gain 17921354
nsv821935 CNV gain 20364138
nsv834583 CNV loss 17160897
nsv997288 CNV gain 25217958

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC150935 Gene

Disorders for LOC150935 Gene

No disorders were found for LOC150935 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC150935 Gene

Publications for LOC150935 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC150935 Gene

Products for LOC150935 Gene

Sources for LOC150935 Gene