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Aliases for LOC150935 Gene
Data sources for LOC150935 Gene:
Subcategory (RNA class) for LOC150935 Gene
lncRNA
Aliases for LOC150935 Gene
- Uncharacterized LOC150935 (NCBI Entrez Gene)
- Lnc-GPC1-2 (LNCipedia)
External Ids for LOC150935 Gene
- NCBI Entrez Gene: 150935
Previous GeneCards Identifiers for LOC150935 Gene
- GC02P238625
- GC02P239257
- GC02P240600
- GC02U900679
- GC02P240349
- GC02P240685
Summaries for LOC150935 Gene
GeneCards Summary for LOC150935 Gene
LOC150935 (Uncharacterized LOC150935) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC150935 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC150935 Gene
Genomics for LOC150935 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC150935 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J239763 | Enhancer | 0.3 | Ensembl | 250.7 | +0.6 | 642 | 1 | CTCF RAD21 | ENSG00000220256 LOC150935 RF00017-3476 LOC401040 NDUFA10 | |
| GH02J239762 | Enhancer | 0.2 | Ensembl | 250.7 | -0.2 | -158 | 0.2 | ENSG00000220256 LOC150935 HSALNG0023533 LOC401040 NDUFA10 | ||
| GH02J239756 | Enhancer | 0.8 | FANTOM5 ENCODE CraniofacialAtlas | 0.4 | -5.8 | -5762 | 1.9 | BMI1 RFX1 TRIM28 POLR2A RAD21 | ENSG00000220256 HDAC4 LOC150935 HSALNG0023533 LOC401040 NDUFA10 | |
| GH02J239751 | Enhancer | 0.6 | ENCODE CraniofacialAtlas | 0.4 | -11.1 | -11119 | 0.9 | SAFB POLR2A IKZF1 | HSALNG0023533 LOC150935 LOC401040 NDUFA10 | |
| GH02J239747 | Enhancer | 0.4 | Ensembl | 0.4 | -15.5 | -15458 | 2 | ZEB1 KLF1 EGR2 EZH2 | HSALNG0023533 LOC150935 LOC401040 NDUFA10 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC150935 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC150935 Gene
Latest Assembly
- chr2:239,762,859-239,800,664
- (GRCh38/hg38)
- Size:
- 37,806 bases
- Orientation:
- Plus strand
Previous Assembly
- chr2:240,684,554-240,722,358
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 37,805 bases
- Orientation:
- Plus strand
Genomic View for LOC150935 Gene
Genes around LOC150935 on UCSC Golden Path with GeneCards custom track
LOC150935 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2q37.3 by Entrez Gene
LOC150935 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC150935 Gene
Proteins for LOC150935 Gene
Post-translational modifications for LOC150935 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC150935 Gene
Domains & Families for LOC150935 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC150935 Gene
Function for LOC150935 Gene
Phenotypes From GWAS Catalog for LOC150935 Gene
Phenotypes for LOC150935 Gene
- GenomeRNAi human phenotypes for LOC150935:
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC150935 Gene
Localization for LOC150935 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC150935 Gene
Transcripts for LOC150935 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC150935 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075DDBB_9606 | lncRNA | 1022 | 2 |
RefSeq: NR_037808, LNCipedia: lnc-GPC1-2:3, |
| URS00008B6D3B_9606 | lncRNA | 1020 | 1 |
LNCipedia: lnc-GPC1-2:1, |
LOC150935 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC150935 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC150935 Gene
- GeneLoc Exon Structure for
- LOC150935
Expression for LOC150935 Gene
mRNA differential expression in normal tissues according to GTEx for LOC150935 Gene
This gene is overexpressed in Brain - Cortex (x9.0), Brain - Frontal Cortex (BA9) (x7.0), Brain - Anterior cingulate cortex (BA24) (x6.3), and Testis (x6.2).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC150935
SOURCE GeneReport for Unigene cluster for LOC150935 Gene:
Hs.555582Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC150935 Gene
Orthologs for LOC150935 Gene
No data available for Orthologs and Evolution for LOC150935 Gene
Paralogs for LOC150935 Gene
No data available for Paralogs for LOC150935 Gene
Variants for LOC150935 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC150935 Gene
Disorders for LOC150935 Gene
No disorders were found for LOC150935 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC150935 Gene
Publications for LOC150935 Gene
- Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
No data available for Mastermind for LOC150935 Gene
Products for LOC150935 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC150935
- Origene Custom Protein Services for LOC150935
- Browse OriGene Inhibitory RNA Products For LOC150935
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC150935
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC150935
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC150935
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC150935
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC150935
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC150935
Sources for LOC150935 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB