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Aliases for LOC150776 Gene

Aliases for LOC150776 Gene

  • Sphingomyelin Phosphodiesterase 4, Neutral Membrane (Neutral Sphingomyelinase-3) Pseudogene 3
  • AC073869.1 5

External Ids for LOC150776 Gene

Previous GeneCards Identifiers for LOC150776 Gene

  • GC02P129812
  • GC02P130434
  • GC02P132271
  • GC02P131958
  • GC02P132270
  • GC02P131494
  • GC02P131496
  • GC02P131533
  • GC02P131550
  • GC02P131563
  • GC02P131599
  • GC02P131619

Summaries for LOC150776 Gene

GeneCards Summary for LOC150776 Gene

LOC150776 (Sphingomyelin Phosphodiesterase 4, Neutral Membrane (Neutral Sphingomyelinase-3) Pseudogene) is a Pseudogene.

Additional gene information for LOC150776 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC150776 Gene

Genomics for LOC150776 Gene

GeneHancer (GH) Regulatory Elements for LOC150776 Gene

Promoters and enhancers for LOC150776 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I131490 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 621.5 -0.2 -244 3.9 HDGF SMAD1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZBTB7B YY1 LOC150776 MZT2A MIR4784 ENSG00000272769
GH02I132264 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 77.7 +776.7 776740 9.7 HDGF PKNOX1 SMAD1 ARNT ZFP64 NEUROD1 SIN3A YBX1 ZBTB7B YY1 LOC105373622 LOC150776 ENSG00000272769 ZNF806 FAM201B ENSG00000213222 CCDC74A C2orf27A GC02P132278
GH02I131527 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 52.6 +35.5 35488 1.4 HDGF HDAC1 PKNOX1 SIN3A BMI1 ZNF2 ZBTB40 ZNF335 EGR1 ATF7 PIR48903 CCDC74A LOC150776 MZT2A PIR38321 GC02P131710
GH02I131424 Promoter/Enhancer 1 Ensembl dbSUPER 43.9 -67.7 -67712 0.6 ZNF202 ZNF282 E2F1 EZH2 GNAQP1 LOC150776 PIR48715
GH02I131514 Enhancer 0.6 ENCODE 62.4 +21.9 21930 0.2 CBFB EBF1 RELA IKZF1 MLLT1 RUNX3 IKZF2 SPI1 LOC150776 PIR47056
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC150776 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC150776 gene promoter:

Genomic Locations for LOC150776 Gene

Genomic Locations for LOC150776 Gene
chr2:131,492,813-131,521,576
(GRCh38/hg38)
Size:
28,764 bases
Orientation:
Plus strand
chr2:132,250,386-132,279,149
(GRCh37/hg19)

Genomic View for LOC150776 Gene

Genes around LOC150776 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC150776 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC150776 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC150776 Gene

Proteins for LOC150776 Gene

Post-translational modifications for LOC150776 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC150776 Gene

Domains & Families for LOC150776 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC150776 Gene

Function for LOC150776 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC150776 Gene

Localization for LOC150776 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC150776 Gene

Pathways & Interactions for LOC150776 Gene

SuperPathways for LOC150776 Gene

No Data Available

Interacting Proteins for LOC150776 Gene

Gene Ontology (GO) - Biological Process for LOC150776 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC150776 Gene

Drugs & Compounds for LOC150776 Gene

No Compound Related Data Available

Transcripts for LOC150776 Gene

mRNA/cDNA for LOC150776 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC150776 Gene

Sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC150776 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9
SP1: - - - -
SP2:
SP3: - - - -
SP4: -
SP5: -
SP6:

Relevant External Links for LOC150776 Gene

GeneLoc Exon Structure for
LOC150776

Expression for LOC150776 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC150776 Gene

SOURCE GeneReport for Unigene cluster for LOC150776 Gene:

Hs.535622
genes like me logo Genes that share expression patterns with LOC150776: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC150776 Gene

Orthologs for LOC150776 Gene

Evolution for LOC150776 Gene

ENSEMBL:
Gene Tree for LOC150776 (if available)
TreeFam:
Gene Tree for LOC150776 (if available)

No data available for Orthologs for LOC150776 Gene

Paralogs for LOC150776 Gene

No data available for Paralogs for LOC150776 Gene

Variants for LOC150776 Gene

Sequence variations from dbSNP and Humsavar for LOC150776 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000180253 -- 131,502,202(+) T/G intron_variant
rs1000317872 -- 131,502,020(+) C/T intron_variant
rs1000385493 -- 131,506,911(+) C/A intron_variant
rs1000797866 -- 131,510,403(+) G/A intron_variant
rs1000830413 -- 131,510,641(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC150776 Gene

Variant ID Type Subtype PubMed ID
dgv4075n100 CNV gain 25217958
dgv4077n100 CNV gain 25217958
dgv4079n100 CNV loss 25217958
dgv4080n100 CNV gain 25217958
dgv476n27 CNV loss 19166990
esv2662689 CNV deletion 23128226
esv2670824 CNV deletion 23128226
esv2759092 CNV gain+loss 17122850
esv2760576 CNV gain+loss 21179565
esv34412 CNV gain 17911159
esv34704 CNV gain 17911159
esv3575300 CNV gain 25503493
esv3584079 CNV loss 25503493
esv3592483 CNV loss 21293372
esv3592484 CNV gain 21293372
esv3592485 CNV gain 21293372
esv3893359 CNV gain+loss 25118596
nsv1002963 CNV gain 25217958
nsv1006738 CNV gain 25217958
nsv1008539 CNV gain 25217958
nsv1014682 CNV loss 25217958
nsv10185 CNV gain+loss 18304495
nsv2926 CNV insertion 18451855
nsv428404 CNV loss 18775914
nsv459396 CNV gain 19166990
nsv470486 CNV loss 18288195
nsv524021 CNV loss 19592680
nsv583140 CNV gain 21841781
nsv583143 CNV gain+loss 21841781
nsv7327 OTHER inversion 18451855
nsv834376 CNV gain 17160897
nsv979124 CNV duplication 23825009
nsv997248 CNV loss 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC150776 Gene

Disorders for LOC150776 Gene

Additional Disease Information for LOC150776

No disorders were found for LOC150776 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC150776 Gene

Publications for LOC150776 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC150776 Gene

Sources for LOC150776 Gene

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