Aliases for LOC148696 Gene

Subcategory (RNA class) for LOC148696 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LOC148696 Gene

  • Uncharacterized LOC148696 3
  • NONHSAG004139 92
  • Lnc-CD46-4 168

External Ids for LOC148696 Gene

Previous GeneCards Identifiers for LOC148696 Gene

  • GC01P206635
  • GC01P203704
  • GC01P204637
  • GC01U900989
  • GC01P206058
  • GC01P207991

Summaries for LOC148696 Gene

GeneCards Summary for LOC148696 Gene

LOC148696 (Uncharacterized LOC148696) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC148696 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC148696 Gene

Genomics for LOC148696 Gene

GeneHancer (GH) Regulatory Elements for LOC148696 Gene

Promoters and enhancers for LOC148696 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J207816 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +4.5 4532 12.5 RXRA ZNF217 EP300 CTCF ZSCAN5C SIN3A TCF12 MYC POLR2G SP1 lnc-CD46-6 CD46 CDCA4P4 MIR29B2CHG CD34 CR1 PLXNA2 CR1L LOC148696 piR-40549
GH01J207815 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 -2.6 -2552 0.9 RUNX1 CTBP1 FOSL1 ZNF395 NR2F1 MAFK STAT1 JUN NR2F6 MEIS2 LOC148696 MIR29B2 MIR29B2CHG
GH01J207811 Enhancer 1 ENCODE dbSUPER 0.4 -5.9 -5885 2.1 CTCF USF1 CLOCK REST ZNF740 MYC TOE1 TGIF2 CTBP1 HINFP CD46 LOC148696 MIR29B2 MIR29B2CHG
GH01J207804 Enhancer 1.1 ENCODE dbSUPER 0.4 -11.4 -11439 4.4 TCF12 FOS POLR2A ZNF263 ZBTB11 AFF1 ZNF740 CTBP1 MYC NCOR1 CD46 MIR29B2 LOC148696 MIR29B2CHG
GH01J207810 Promoter/Enhancer 0.7 Ensembl dbSUPER 0.4 -7.3 -7278 0.2 ZNF584 CEBPB LOC148696 MIR29B2 MIR29B2CHG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC148696 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC148696 gene promoter:
  • AP-1
  • ATF6
  • c-Fos
  • c-Jun
  • CUTL1
  • FOXO4
  • LCR-F1
  • NF-1
  • Nkx2-5
  • SRF (504 AA)

Genomic Locations for LOC148696 Gene

Genomic Locations for LOC148696 Gene
chr1:207,818,379-207,822,596
(GRCh38/hg38)
Size:
4,218 bases
Orientation:
Plus strand
chr1:207,991,724-207,995,941
(GRCh37/hg19)
Size:
4,218 bases
Orientation:
Plus strand

Genomic View for LOC148696 Gene

Genes around LOC148696 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC148696 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC148696 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC148696 Gene

Proteins for LOC148696 Gene

Post-translational modifications for LOC148696 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC148696 Gene

Domains & Families for LOC148696 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC148696 Gene

Function for LOC148696 Gene

Phenotypes From GWAS Catalog for LOC148696 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC148696 Gene

Localization for LOC148696 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC148696 Gene

Pathways & Interactions for LOC148696 Gene

PathCards logo

SuperPathways for LOC148696 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC148696 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC148696 Gene

Drugs & Compounds for LOC148696 Gene

No Compound Related Data Available

Transcripts for LOC148696 Gene

mRNA/cDNA for LOC148696 Gene

2 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC148696 Gene

No ASD Table

Relevant External Links for LOC148696 Gene

GeneLoc Exon Structure for
LOC148696

Expression for LOC148696 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC148696 Gene

mRNA expression in normal human tissues for LOC148696 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC148696

SOURCE GeneReport for Unigene cluster for LOC148696 Gene:

Hs.125511
genes like me logo Genes that share expression patterns with LOC148696: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC148696 Gene

Orthologs for LOC148696 Gene

No data available for Orthologs and Evolution for LOC148696 Gene

Paralogs for LOC148696 Gene

No data available for Paralogs for LOC148696 Gene

Variants for LOC148696 Gene

Additional dbSNP identifiers (rs#s) for LOC148696 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC148696 Gene

Disorders for LOC148696 Gene

Additional Disease Information for LOC148696

Genetic Association Database
(GAD)

No disorders were found for LOC148696 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC148696 Gene

Publications for LOC148696 Gene

  1. A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits. (PMID: 19396169) Cho YS … Kim HL (Nature genetics 2009) 3 41 54

No data available for Mastermind for LOC148696 Gene

Products for LOC148696 Gene

Sources for LOC148696 Gene