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Aliases for LOC148413 Gene

Subcategory (RNA class) for LOC148413 Gene

antisense

Quality Score for this RNA gene is

13

Aliases for LOC148413 Gene

  • Uncharacterized LOC148413 3
  • AL391244.1 5

External Ids for LOC148413 Gene

ORGUL Members for LOC148413 Gene

Previous GeneCards Identifiers for LOC148413 Gene

  • GC01P000862
  • GC01P001087
  • GC01M9G0169
  • GC01U900476
  • GC01P001286
  • GC01P001420
  • GC01P001324
  • GC01P000635
  • GC01P001337

Summaries for LOC148413 Gene

GeneCards Summary for LOC148413 Gene

LOC148413 (Uncharacterized LOC148413) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for LOC148413 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC148413 Gene

Genomics for LOC148413 Gene

GeneHancer (GH) Regulatory Elements for LOC148413 Gene

Promoters and enhancers for LOC148413 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J001397 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 +0.6 592 5.5 MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC SSRP1 CCNL2 LOC148413 INTS11 ATAD3B ENSG00000240731 LOC100288379 ENSG00000230092 SLC35E2A LOC100129381 CDK11A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC148413 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC148413 gene promoter:
  • Tal-1beta
  • E47
  • NCX
  • Lmo2
  • Elk-1
  • POU2F1a
  • POU2F1
  • Gfi-1
  • GATA-2
  • NF-kappaB1

Genomic Locations for LOC148413 Gene

Genomic Locations for LOC148413 Gene
chr1:1,399,522-1,402,046
(GRCh38/hg38)
Size:
2,525 bases
Orientation:
Plus strand
chr1:1,334,902-1,337,426
(GRCh37/hg19)
Size:
2,525 bases
Orientation:
Plus strand

Genomic View for LOC148413 Gene

Genes around LOC148413 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC148413 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC148413 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC148413 Gene

Proteins for LOC148413 Gene

Post-translational modifications for LOC148413 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC148413 Gene

Domains & Families for LOC148413 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC148413 Gene

Function for LOC148413 Gene

Phenotypes for LOC148413 Gene

GenomeRNAi human phenotypes for LOC148413:
genes like me logo Genes that share phenotypes with LOC148413: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC148413 Gene

Localization for LOC148413 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC148413 Gene

Pathways & Interactions for LOC148413 Gene

SuperPathways for LOC148413 Gene

No Data Available

Interacting Proteins for LOC148413 Gene

Gene Ontology (GO) - Biological Process for LOC148413 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC148413 Gene

Drugs & Compounds for LOC148413 Gene

No Compound Related Data Available

Transcripts for LOC148413 Gene

mRNA/cDNA for LOC148413 Gene

Unigene Clusters for LOC148413 Gene

Uncharacterized LOC148413:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC148413 Gene

No ASD Table

Relevant External Links for LOC148413 Gene

GeneLoc Exon Structure for
LOC148413

Expression for LOC148413 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC148413 Gene

SOURCE GeneReport for Unigene cluster for LOC148413 Gene:

Hs.741357
genes like me logo Genes that share expression patterns with LOC148413: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC148413 Gene

Orthologs for LOC148413 Gene

Evolution for LOC148413 Gene

ENSEMBL:
Gene Tree for LOC148413 (if available)
TreeFam:
Gene Tree for LOC148413 (if available)

No data available for Orthologs for LOC148413 Gene

Paralogs for LOC148413 Gene

No data available for Paralogs for LOC148413 Gene

Variants for LOC148413 Gene

Sequence variations from dbSNP and Humsavar for LOC148413 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000334281 -- 1,397,605(+) T/C upstream_transcript_variant
rs1000366882 -- 1,397,805(+) T/C upstream_transcript_variant
rs1000693960 -- 1,402,447(+) G/A/C downstream_transcript_variant
rs1000781317 -- 1,400,500(+) C/G intron_variant
rs1000856398 -- 1,400,658(+) A/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC148413 Gene

Variant ID Type Subtype PubMed ID
dgv2n67 CNV gain 20364138
esv2758913 CNV gain+loss 17122850
nsv1009541 CNV gain 25217958
nsv1011818 CNV gain 25217958
nsv10161 CNV gain+loss 18304495
nsv482937 CNV loss 15286789
nsv950452 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC148413 Gene

Disorders for LOC148413 Gene

Additional Disease Information for LOC148413

No disorders were found for LOC148413 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC148413 Gene

Publications for LOC148413 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  2. A directed protein interaction network for investigating intracellular signal transduction. (PMID: 21900206) Vinayagam A … Wanker EE (Science signaling 2011) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC148413 Gene

Sources for LOC148413 Gene

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