Aliases for LOC147004 Gene

Subcategory (RNA class) for LOC147004 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC147004 Gene

  • Uncharacterized LOC147004 3

External Ids for LOC147004 Gene

Previous GeneCards Identifiers for LOC147004 Gene

  • GC17P031631
  • GC17P033900
  • GC17P031709
  • GC17U900059
  • GC17P032006
  • GC17P028885
  • GC17P031862

Summaries for LOC147004 Gene

GeneCards Summary for LOC147004 Gene

LOC147004 (Uncharacterized LOC147004) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC147004 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC147004 Gene

Genomics for LOC147004 Gene

GeneHancer (GH) Regulatory Elements for LOC147004 Gene

Promoters and enhancers for LOC147004 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J033583 Enhancer 0.5 Ensembl ENCODE 0.2 +49.5 49468 1.4 PRDM10 NANOG piR-53788 ENSG00000265125 ENSG00000265115 LOC147004 ASIC2
GH17J033602 Enhancer 0.6 Ensembl ENCODE 0.2 +70.1 70101 2.3 RFX1 POLR2A BMI1 USF1 ENSG00000265115 piR-53788 ENSG00000265125 LOC147004 ASIC2
GH17J033579 Enhancer 0.4 FANTOM5 0.2 +46.1 46114 0.3 ZNF316 EMSY piR-41283 piR-53788 ENSG00000265125 LOC147004 ASIC2
GH17J033597 Enhancer 0.4 Ensembl ENCODE 0.2 +62.9 62949 1.4 SCRT2 piR-53788 ENSG00000265115 ENSG00000265125 LOC147004 ASIC2
GH17J033584 Enhancer 0.2 Ensembl 0.2 +48.4 48368 0.4 piR-53788 ENSG00000265125 ENSG00000265115 LOC147004 ASIC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC147004 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC147004 Gene

Genomic Locations for LOC147004 Gene
chr17:33,533,833-33,627,260
(GRCh38/hg38)
Size:
93,428 bases
Orientation:
Plus strand
chr17:31,861,129-31,868,358
(GRCh37/hg19)
Size:
7,230 bases
Orientation:
Plus strand

Genomic View for LOC147004 Gene

Genes around LOC147004 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC147004 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC147004 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC147004 Gene

Proteins for LOC147004 Gene

Post-translational modifications for LOC147004 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC147004 Gene

Domains & Families for LOC147004 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC147004 Gene

Function for LOC147004 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC147004 Gene

Localization for LOC147004 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC147004 Gene

Pathways & Interactions for LOC147004 Gene

PathCards logo

SuperPathways for LOC147004 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC147004 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC147004 Gene

Drugs & Compounds for LOC147004 Gene

No Compound Related Data Available

Transcripts for LOC147004 Gene

mRNA/cDNA for LOC147004 Gene

(3) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC147004 Gene

No ASD Table

Relevant External Links for LOC147004 Gene

GeneLoc Exon Structure for
LOC147004

Expression for LOC147004 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC147004 Gene

mRNA differential expression in normal tissues according to GTEx for LOC147004 Gene

This gene is overexpressed in Testis (x39.3), Brain - Cortex (x4.7), Cervix - Ectocervix (x4.6), and Cervix - Endocervix (x4.4).

SOURCE GeneReport for Unigene cluster for LOC147004 Gene:

Hs.652871
genes like me logo Genes that share expression patterns with LOC147004: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC147004 Gene

Orthologs for LOC147004 Gene

No data available for Orthologs and Evolution for LOC147004 Gene

Paralogs for LOC147004 Gene

No data available for Paralogs for LOC147004 Gene

Variants for LOC147004 Gene

Sequence variations from dbSNP and Humsavar for LOC147004 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000017219 -- 33,574,164(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000182478 -- 33,577,906(+) G/C genic_downstream_transcript_variant, intron_variant
rs1000346828 -- 33,563,077(+) A/G/T genic_upstream_transcript_variant, intron_variant
rs1000463165 -- 33,585,684(+) A/C/G genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000504696 -- 33,558,694(+) A/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC147004 Gene

Disorders for LOC147004 Gene

No disorders were found for LOC147004 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC147004 Gene

Publications for LOC147004 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LOC147004 Gene

Products for LOC147004 Gene

Sources for LOC147004 Gene