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Aliases for LOC145845 Gene

Subcategory (RNA class) for LOC145845 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC145845 Gene

  • Uncharacterized LOC145845 3

External Ids for LOC145845 Gene

Previous GeneCards Identifiers for LOC145845 Gene

  • GC15M032500
  • GC15M030052
  • GC15M034735
  • GC15U900235
  • GC15M034872
  • GC15M034943
  • GC15M037156

Summaries for LOC145845 Gene

GeneCards Summary for LOC145845 Gene

LOC145845 (Uncharacterized LOC145845) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC145845 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC145845 Gene

Genomics for LOC145845 Gene

GeneHancer (GH) Regulatory Elements for LOC145845 Gene

Promoters and enhancers for LOC145845 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J036887 Promoter/Enhancer 1.2 Ensembl ENCODE 600.7 -1.3 -1288 2.4 PKNOX1 RFX1 PRDM10 POLR2A SP2 EZH2 EGR1 ZFHX2 ZNF335 ZNF202 ENSG00000259280 LOC145845 MIR8063
GH15J036884 Enhancer 0.4 UCNEbase 600.7 +1.9 1850 0.2 LOC145845 ENSG00000259280 ENSG00000212511
GH15J036885 Enhancer 0.2 ENCODE 600.7 +0.5 538 0.2 ENSG00000259280 LOC145845 ENSG00000212511
GH15J036886 Enhancer 0.2 ENCODE 600.7 +0.2 218 0.2 ENSG00000259280 LOC145845 ENSG00000212511
GH15J036882 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE 0.7 +3.2 3233 1.8 SP1 CC2D1A CTCF PRDM1 RAD21 GLIS2 POLR2A ARID2 RNF2 ZBTB8A MEIS2 C15orf41 ENSG00000259280 LOC145845 ENSG00000212511
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC145845 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC145845 gene promoter:
  • C/EBPbeta
  • COMP1
  • CUTL1
  • FOXD3
  • IRF-2
  • Nkx2-5
  • SRY
  • STAT5B
  • USF-1
  • USF1

Genomic Locations for LOC145845 Gene

Genomic Locations for LOC145845 Gene
chr15:36,864,443-36,886,533
(GRCh38/hg38)
Size:
22,091 bases
Orientation:
Minus strand
chr15:37,156,644-37,179,236
(GRCh37/hg19)
Size:
22,593 bases
Orientation:
Minus strand

Genomic View for LOC145845 Gene

Genes around LOC145845 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC145845 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC145845 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC145845 Gene

Proteins for LOC145845 Gene

Post-translational modifications for LOC145845 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC145845 Gene

Domains & Families for LOC145845 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC145845 Gene

Function for LOC145845 Gene

Phenotypes for LOC145845 Gene

genes like me logo Genes that share phenotypes with LOC145845: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC145845 Gene

Localization for LOC145845 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC145845 Gene

Pathways & Interactions for LOC145845 Gene

PathCards logo

SuperPathways for LOC145845 Gene

No Data Available

Interacting Proteins for LOC145845 Gene

Gene Ontology (GO) - Biological Process for LOC145845 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC145845 Gene

Drugs & Compounds for LOC145845 Gene

No Compound Related Data Available

Transcripts for LOC145845 Gene

mRNA/cDNA for LOC145845 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) RNA Central transcripts :

Unigene Clusters for LOC145845 Gene

Uncharacterized LOC145845:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC145845 Gene

No ASD Table

Relevant External Links for LOC145845 Gene

GeneLoc Exon Structure for
LOC145845

Expression for LOC145845 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC145845 Gene

mRNA differential expression in normal tissues according to GTEx for LOC145845 Gene

This gene is overexpressed in Testis (x11.2), Brain - Nucleus accumbens (basal ganglia) (x8.8), Brain - Caudate (basal ganglia) (x6.0), Brain - Putamen (basal ganglia) (x5.1), and Uterus (x4.8).

SOURCE GeneReport for Unigene cluster for LOC145845 Gene:

Hs.302693
genes like me logo Genes that share expression patterns with LOC145845: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC145845 Gene

Orthologs for LOC145845 Gene

No data available for Orthologs and Evolution for LOC145845 Gene

Paralogs for LOC145845 Gene

No data available for Paralogs for LOC145845 Gene

Variants for LOC145845 Gene

Sequence variations from dbSNP and Humsavar for LOC145845 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000162369 -- 36,868,074(-) G/A intron_variant
rs1000344544 -- 36,874,750(-) G/A intron_variant
rs1000364970 -- 36,881,189(-) T/C intron_variant
rs1000499469 -- 36,866,634(-) T/C non_coding_transcript_variant
rs1000552502 -- 36,876,731(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC145845 Gene

Variant ID Type Subtype PubMed ID
nsv569198 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC145845 Gene

Disorders for LOC145845 Gene

No disorders were found for LOC145845 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC145845 Gene

Publications for LOC145845 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC145845 Gene

Products for LOC145845 Gene

Sources for LOC145845 Gene

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