Aliases for LOC143666 Gene

Subcategory (RNA class) for LOC143666 Gene

ncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC143666 Gene

  • Uncharacterized LOC143666 3
  • NONHSAG007325.2 91
  • HSALNG0081993 164
  • Lnc-LMNTD2-3 165

External Ids for LOC143666 Gene

Previous GeneCards Identifiers for LOC143666 Gene

  • GC11M001165
  • GC11U900128
  • GC11P000563
  • GC11M000573

Summaries for LOC143666 Gene

GeneCards Summary for LOC143666 Gene

LOC143666 (Uncharacterized LOC143666) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC143666 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC143666 Gene

Genomics for LOC143666 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC143666 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J000575 Enhancer 0.7 ENCODE 600.7 +1.5 1530 0.1 LEF1 REST TOE1 MGA USF2 RAD51 ZNF316 MNT MAFG ZNF335 LOC143666 lnc-PHRF1-1 piR-45349-007 PHRF1 LMNTD2
GH11J000574 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.7 -2.3 -2333 7.2 SP1 GATAD2A ATF7 PRDM10 ZNF629 TFE3 SIX5 NFKBIZ POLR2A ZNF692 PHRF1 piR-42043-001 TMEM80 HRAS LMNTD2-AS1 IRF7 ENSG00000255158 RNH1 PKP3 LOC143666
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC143666 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC143666 gene promoter:
  • AhR
  • aMEF-2
  • AP-4
  • ER-alpha
  • HSF2
  • MEF-2A
  • N-Myc
  • p53
  • Pax-3
  • SEF-1 (1)

Genomic Locations for LOC143666 Gene

Genomic Locations for LOC143666 Gene
chr11:572,526-575,886
(GRCh38/hg38)
Size:
3,361 bases
Orientation:
Minus strand
chr11:573,808-575,885
(GRCh37/hg19)
Size:
2,078 bases
Orientation:
Minus strand

Genomic View for LOC143666 Gene

Genes around LOC143666 on UCSC Golden Path with GeneCards custom track
LOC143666 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC143666 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC143666 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC143666 Gene

Proteins for LOC143666 Gene

Post-translational modifications for LOC143666 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC143666 Gene

Domains & Families for LOC143666 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC143666 Gene

Function for LOC143666 Gene

Phenotypes From GWAS Catalog for LOC143666 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC143666 Gene

Localization for LOC143666 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC143666 Gene

Pathways & Interactions for LOC143666 Gene

PathCards logo

SuperPathways for LOC143666 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC143666 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC143666 Gene

Drugs & Compounds for LOC143666 Gene

No Compound Related Data Available

Transcripts for LOC143666 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC143666 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C0FE_9606 lncRNA 2078 3

RefSeq: NR_026967,

LNCipedia: lnc-LMNTD2-3:3,

NONCODE: NONHSAT017287.2,

URS00008C1AF6_9606 lncRNA 1668 3

LncBook: HSALNT0170828, HSALNT0170829,

LNCipedia: lnc-LMNTD2-3:1, lnc-LMNTD2-3:2,

NONCODE: NONHSAT017285.2, NONHSAT017286.2,

URS0000D59EC9_9606 lncRNA 2518 2

LncBook: HSALNT0170826,

LNCipedia: lnc-LMNTD2-3:4,

URS00009B1B20_9606 lncRNA 1668 2

LncBook: HSALNT0170830,

NONCODE: NONHSAT159979.1,

URS0000D5BC6B_9606 lncRNA 3320 1

LNCipedia: lnc-LMNTD2-3:5,

LOC143666 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC143666 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC143666 Gene

No ASD Table

Relevant External Links for LOC143666 Gene

GeneLoc Exon Structure for
LOC143666

Expression for LOC143666 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC143666 Gene

mRNA expression in normal human tissues for LOC143666 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC143666

SOURCE GeneReport for Unigene cluster for LOC143666 Gene:

Hs.337054
genes like me logo Genes that share expression patterns with LOC143666: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC143666 Gene

Orthologs for LOC143666 Gene

No data available for Orthologs and Evolution for LOC143666 Gene

Paralogs for LOC143666 Gene

No data available for Paralogs for LOC143666 Gene

Variants for LOC143666 Gene

Additional dbSNP identifiers (rs#s) for LOC143666 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC143666 Gene

Variant ID Type Subtype PubMed ID
dgv1522n54 CNV loss 21841781
dgv1523n54 CNV gain 21841781
dgv182e199 CNV deletion 23128226
dgv564n106 OTHER inversion 24896259
esv2759794 CNV loss 17122850
nsv1039558 CNV gain 25217958
nsv1053964 CNV gain 25217958
nsv1077764 OTHER inversion 25765185
nsv1159791 CNV deletion 26073780
nsv467634 CNV loss 19166990
nsv467635 CNV loss 19166990
nsv469923 CNV loss 18288195
nsv469924 CNV gain 18288195
nsv518824 CNV loss 19592680
nsv527327 CNV loss 19592680
nsv528415 CNV loss 19592680
nsv552854 CNV loss 21841781
nsv552856 CNV gain 21841781
nsv951270 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC143666 Gene

Disorders for LOC143666 Gene

No disorders were found for LOC143666 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC143666 Gene

Publications for LOC143666 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC143666 Gene

Products for LOC143666 Gene

Sources for LOC143666 Gene