LOC123862 Gene (Pseudogene)

Interferon Induced Transmembrane Protein Pseudogene

GC16P084920
GIFtS:
3
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Aliases for LOC123862 Gene

Aliases for LOC123862 Gene

  • Interferon Induced Transmembrane Protein Pseudogene 3

External Ids for LOC123862 Gene

Previous GeneCards Identifiers for LOC123862 Gene

  • GC16M075778
  • GC16P085920
  • GC16P084692
  • GC16P084733
  • GC16P083511
  • GC16P084955

Summaries for LOC123862 Gene

GeneCards Summary for LOC123862 Gene

LOC123862 (Interferon Induced Transmembrane Protein Pseudogene) is a Pseudogene.

Additional gene information for LOC123862 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC123862 Gene

Genomics for LOC123862 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC123862 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J084920 Enhancer 0.2 Ensembl 600.7 +0.3 271 0.2 LOC123862 ENSG00000279622 LOC101928474 ZDHHC7 CRISPLD2
GH16J084921 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +2.3 2287 2 HNRNPL REST SP1 SOX13 NFE2 FOXK2 TGIF2 CTCF ZNF316 MAFG USP10 ENSG00000279622 LOC101928474 LOC123862 ZDHHC7 CRISPLD2
GH16J084924 Enhancer 1 ENCODE dbSUPER 0.7 +4.4 4367 1.4 HNRNPL GATAD2A CTCF TFE3 NFKBIZ JUND ZNF143 PHF21A PKNOX1 MTA1 ENSG00000279622 LOC101928474 CRISPLD2 ZDHHC7 USP10 LOC123862
GH16J084910 Enhancer 0.6 FANTOM5 dbSUPER 0.4 -8.8 -8774 0.3 CEBPA CEBPB FOXA2 ZNF3 COTL1 KIAA0513 CRISPLD2 ZDHHC7 lnc-ZDHHC7-3 LOC123862 LOC101928474
GH16J084914 Enhancer 0.3 dbSUPER 0.4 -5.7 -5707 0.6 ZBTB20 ZSCAN29 LOC123862 lnc-ZDHHC7-3 LOC101928474 CRISPLD2 ZDHHC7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC123862 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC123862 Gene

Genomic Locations for LOC123862 Gene
chr16:84,920,430-84,921,038
(GRCh38/hg38)
Size:
609 bases
Orientation:
Plus strand
chr16:84,954,036-84,954,644
(GRCh37/hg19)
Size:
609 bases
Orientation:
Plus strand

Genomic View for LOC123862 Gene

Genes around LOC123862 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC123862 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC123862 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC123862 Gene

Proteins for LOC123862 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC123862 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC123862 Gene

Domains & Families for LOC123862 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC123862 Gene

Function for LOC123862 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC123862 Gene

Localization for LOC123862 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC123862 Gene

Pathways & Interactions for LOC123862 Gene

PathCards logo

SuperPathways for LOC123862 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC123862 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC123862 Gene

Drugs & Compounds for LOC123862 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC123862 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC123862 Gene

No ASD Table

Relevant External Links for LOC123862 Gene

GeneLoc Exon Structure for
LOC123862

No data available for mRNA/cDNA for LOC123862 Gene

Expression for LOC123862 Gene

Products:

  1. Primer
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC123862 Gene

Orthologs for LOC123862 Gene

No data available for Orthologs and Evolution for LOC123862 Gene

Paralogs for LOC123862 Gene

No data available for Paralogs for LOC123862 Gene

Variants for LOC123862 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC123862 Gene

Disorders for LOC123862 Gene

No disorders were found for LOC123862 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC123862 Gene

Publications for LOC123862 Gene

No publications were found for LOC123862 Gene.

No data available for Mastermind for LOC123862 Gene

Products for LOC123862 Gene

Sources for LOC123862 Gene