Aliases for LOC112268411 Gene

Subcategory (RNA class) for LOC112268411 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC112268411 Gene

  • Uncharacterized LOC112268411 3
  • Novel Transcript 5
  • NONHSAG026886 92
  • HSALNG0012678 167
  • Lnc-SOX11-2 168
  • AC010729.1 5

External Ids for LOC112268411 Gene

Previous GeneCards Identifiers for LOC112268411 Gene

  • GC02U904526

Summaries for LOC112268411 Gene

GeneCards Summary for LOC112268411 Gene

LOC112268411 (Uncharacterized LOC112268411) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC112268411 include Retinitis Pigmentosa 11 and Retinitis Pigmentosa.

Additional gene information for LOC112268411 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC112268411 Gene

Genomics for LOC112268411 Gene

GeneHancer (GH) Regulatory Elements for LOC112268411 Gene

Promoters and enhancers for LOC112268411 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J005725 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.1 -104 2.1 EP300 TEAD4 POLR2A HDAC2 SMC3 YY1 NANOG TCF12 SIN3A CTCF LOC112268411 ENSG00000242540 SOX11 LINC01248 ENSG00000230090 lnc-CMPK2-12
GH02J005730 Enhancer 0.2 Ensembl 0.7 +4.2 4248 0.2 lnc-CMPK2-30 piR-32214-351 LOC112268411
GH02J005731 Enhancer 0.2 Ensembl 0.4 +5.5 5548 0.8 lnc-CMPK2-30 piR-31534-363 piR-32214-351 LOC112268411
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC112268411 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC112268411 Gene

Genomic Locations for LOC112268411 Gene
chr2:5,726,253-5,732,183
(GRCh38/hg38)
Size:
5,931 bases
Orientation:
Plus strand
chr2:5,866,581-5,870,474
(GRCh37/hg19)
Size:
3,894 bases
Orientation:
Plus strand

Genomic View for LOC112268411 Gene

Genes around LOC112268411 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC112268411 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC112268411 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC112268411 Gene

Proteins for LOC112268411 Gene

Post-translational modifications for LOC112268411 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC112268411 Gene

Domains & Families for LOC112268411 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC112268411 Gene

Function for LOC112268411 Gene

Phenotypes From GWAS Catalog for LOC112268411 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC112268411 Gene

Localization for LOC112268411 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC112268411 Gene

Pathways & Interactions for LOC112268411 Gene

PathCards logo

SuperPathways for LOC112268411 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC112268411 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC112268411 Gene

Drugs & Compounds for LOC112268411 Gene

No Compound Related Data Available

Transcripts for LOC112268411 Gene

mRNA/cDNA for LOC112268411 Gene

6 RNACentral transcripts :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC112268411 Gene

No ASD Table

Relevant External Links for LOC112268411 Gene

GeneLoc Exon Structure for
LOC112268411

Expression for LOC112268411 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC112268411 Gene

Orthologs for LOC112268411 Gene

Evolution for LOC112268411 Gene

ENSEMBL:
Gene Tree for LOC112268411 (if available)
TreeFam:
Gene Tree for LOC112268411 (if available)

No data available for Orthologs for LOC112268411 Gene

Paralogs for LOC112268411 Gene

No data available for Paralogs for LOC112268411 Gene

Variants for LOC112268411 Gene

Additional dbSNP identifiers (rs#s) for LOC112268411 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC112268411 Gene

Disorders for LOC112268411 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LOC112268411 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
retinitis pigmentosa
  • retinitis pigmentosa 1
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC112268411: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC112268411 Gene

Publications for LOC112268411 Gene

No publications were found for LOC112268411 Gene.

No data available for Mastermind for LOC112268411 Gene

Products for LOC112268411 Gene

Sources for LOC112268411 Gene