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Aliases for LOC112268124 Gene

Subcategory (RNA class) for LOC112268124 Gene

antisense

Quality Score for this RNA gene is

13

Aliases for LOC112268124 Gene

  • Uncharacterized LOC112268124 3
  • Vegetative Cell Wall Protein Gp1-Like 3 5
  • AL121603.2 5

External Ids for LOC112268124 Gene

ORGUL Members for LOC112268124 Gene

Previous GeneCards Identifiers for LOC112268124 Gene

  • GC14U902179

Summaries for LOC112268124 Gene

GeneCards Summary for LOC112268124 Gene

LOC112268124 (Uncharacterized LOC112268124) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for LOC112268124 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC112268124 Gene

Genomics for LOC112268124 Gene

GeneHancer (GH) Regulatory Elements for LOC112268124 Gene

Promoters and enhancers for LOC112268124 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J034872 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 608 +0.1 50 4.2 ZNF652 SP1 ELF3 ZFX MNT CBFA2T2 ZNF148 NKRF POLR2A MLLT1 LOC112268124 BAZ1A RPS19P3 EAPP RALGAPA1 PPP2R3C FAM177A1 SRP54 IGBP1P1 PRORP
GH14J034884 Enhancer 1 FANTOM5 Ensembl 8 +9.3 9258 2.8 CEBPG PPARG SP5 ZNF384 KAT8 HMG20B CEBPA GATAD2A RXRB RCOR2 CFL2 RNU1-27P EAPP BAZ1A LOC112268124 IGBP1P1 FAM177A1 PRORP PPP2R3C ENSG00000258493
GH14J034867 Enhancer 0.7 Ensembl dbSUPER 7.7 -6.8 -6842 1 SOX13 RCOR1 ZNF202 TEAD3 RPS19P3 EAPP LOC112268124 PPP2R3C IGBP1P1 PSMA6 BAZ1A RNU7-41P
GH14J034860 Enhancer 0.5 Ensembl dbSUPER 7.6 -12.8 -12842 0.6 HLF SNX6 LOC112268124 IGBP1P1 BAZ1A RNU7-41P
GH14J034862 Enhancer 0.4 Ensembl dbSUPER 7.6 -11.6 -11642 1 LOC112268124 IGBP1P1 BAZ1A RNU7-41P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC112268124 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC112268124 Gene

Genomic Locations for LOC112268124 Gene
chr14:34,874,343-34,876,459
(GRCh38/hg38)
Size:
2,117 bases
Orientation:
Plus strand
chr14:35,343,549-35,345,665
(GRCh37/hg19)
Size:
2,117 bases
Orientation:
Plus strand

Genomic View for LOC112268124 Gene

Genes around LOC112268124 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC112268124 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC112268124 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC112268124 Gene

Proteins for LOC112268124 Gene

Post-translational modifications for LOC112268124 Gene

No Post-translational modifications

Other Protein References for LOC112268124 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC112268124 Gene

Domains & Families for LOC112268124 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC112268124 Gene

Function for LOC112268124 Gene

Phenotypes From GWAS Catalog for LOC112268124 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC112268124 Gene

Localization for LOC112268124 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC112268124 Gene

Pathways & Interactions for LOC112268124 Gene

PathCards logo

SuperPathways for LOC112268124 Gene

No Data Available

Interacting Proteins for LOC112268124 Gene

Gene Ontology (GO) - Biological Process for LOC112268124 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC112268124 Gene

Drugs & Compounds for LOC112268124 Gene

No Compound Related Data Available

Transcripts for LOC112268124 Gene

mRNA/cDNA for LOC112268124 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC112268124 Gene

No ASD Table

Relevant External Links for LOC112268124 Gene

GeneLoc Exon Structure for
LOC112268124

Expression for LOC112268124 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC112268124 Gene

Orthologs for LOC112268124 Gene

Evolution for LOC112268124 Gene

ENSEMBL:
Gene Tree for LOC112268124 (if available)
TreeFam:
Gene Tree for LOC112268124 (if available)

No data available for Orthologs for LOC112268124 Gene

Paralogs for LOC112268124 Gene

No data available for Paralogs for LOC112268124 Gene

Variants for LOC112268124 Gene

Sequence variations from dbSNP and Humsavar for LOC112268124 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000247255 -- 34,873,479(+) T/G upstream_transcript_variant
rs1000345301 -- 34,874,626(+) G/T 5_prime_UTR_variant
rs1000683083 -- 34,876,387(+) A/G 3_prime_UTR_variant
rs1001177840 -- 34,875,443(+) T/C coding_sequence_variant, missense_variant
rs1001228547 -- 34,875,263(+) T/C coding_sequence_variant, missense_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC112268124 Gene

Disorders for LOC112268124 Gene

No disorders were found for LOC112268124 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC112268124 Gene

Publications for LOC112268124 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC112268124 Gene

Products for LOC112268124 Gene

Sources for LOC112268124 Gene

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