This genomic sequence was predicted to be a transcriptional regulatory region based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. It was validated as a functional enhancer by the Sharpr-MPRA technique (Systematic high-resolution activation and repression profiling with reporter tiling using massively parallel reporter assays) in K562 erythr... See more...

Aliases for LOC111946241 Gene

Aliases for LOC111946241 Gene

  • Sharpr-MPRA Regulatory Region 4527 3

External Ids for LOC111946241 Gene

Previous GeneCards Identifiers for LOC111946241 Gene

  • GC10U902840

Summaries for LOC111946241 Gene

Entrez Gene Summary for LOC111946241 Gene

  • This genomic sequence was predicted to be a transcriptional regulatory region based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. It was validated as a functional enhancer by the Sharpr-MPRA technique (Systematic high-resolution activation and repression profiling with reporter tiling using massively parallel reporter assays) in K562 erythroleukemia cells (group: K562 Activating DNase matched - State 5:Enh, candidate strong enhancer, open chromatin). [provided by RefSeq, Feb 2018]

GeneCards Summary for LOC111946241 Gene

LOC111946241 (Sharpr-MPRA Regulatory Region 4527) is a Biological Region gene.

Additional gene information for LOC111946241 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC111946241 Gene

Genomics for LOC111946241 Gene

Genomic Locations for LOC111946241 Gene

Genomic Locations for LOC111946241 Gene
chr10:5,284,466-5,284,760
(GRCh38/hg38)
Size:
295 bases
Orientation:
Plus strand

Genomic View for LOC111946241 Gene

Genes around LOC111946241 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC111946241 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC111946241 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC111946241 Gene

No data available for GeneHancer (GH) Regulatory Elements for LOC111946241 Gene

Proteins for LOC111946241 Gene

Post-translational modifications for LOC111946241 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC111946241 Gene

Domains & Families for LOC111946241 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC111946241 Gene

Function for LOC111946241 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC111946241 Gene

Localization for LOC111946241 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC111946241 Gene

Pathways & Interactions for LOC111946241 Gene

PathCards logo

SuperPathways for LOC111946241 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC111946241 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC111946241 Gene

Drugs & Compounds for LOC111946241 Gene

No Compound Related Data Available

Transcripts for LOC111946241 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC111946241 Gene

No ASD Table

Relevant External Links for LOC111946241 Gene

GeneLoc Exon Structure for
LOC111946241

No data available for mRNA/cDNA for LOC111946241 Gene

Expression for LOC111946241 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC111946241 Gene

Orthologs for LOC111946241 Gene

No data available for Orthologs and Evolution for LOC111946241 Gene

Paralogs for LOC111946241 Gene

No data available for Paralogs for LOC111946241 Gene

Variants for LOC111946241 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC111946241 Gene

Disorders for LOC111946241 Gene

No disorders were found for LOC111946241 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC111946241 Gene

Publications for LOC111946241 Gene

  1. Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions. (PMID: 27701403) Ernst J … Kellis M (Nature biotechnology 2016) 3

No data available for Mastermind for LOC111946241 Gene

Products for LOC111946241 Gene

Sources for LOC111946241 Gene