This genomic sequence was predicted to be a transcriptional regulatory region based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. It was validated as a functional enhancer by the Sharpr-MPRA technique (Systematic high-resolution activation and repression profiling with reporter tiling using massively parallel reporter assays) in HepG2 liver... See more...

Aliases for LOC111946240 Gene

Aliases for LOC111946240 Gene

  • Sharpr-MPRA Regulatory Region 4601 3

External Ids for LOC111946240 Gene

Summaries for LOC111946240 Gene

Entrez Gene Summary for LOC111946240 Gene

  • This genomic sequence was predicted to be a transcriptional regulatory region based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. It was validated as a functional enhancer by the Sharpr-MPRA technique (Systematic high-resolution activation and repression profiling with reporter tiling using massively parallel reporter assays) in HepG2 liver carcinoma cells (group: HepG2 Activating non-DNase unmatched - State 22:ReprW, weaker Polycomb repression). [provided by RefSeq, Feb 2018]

GeneCards Summary for LOC111946240 Gene

LOC111946240 (Sharpr-MPRA Regulatory Region 4601) is a Biological Region gene.

Additional gene information for LOC111946240 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC111946240 Gene

Genomics for LOC111946240 Gene

Genomic Locations for LOC111946240 Gene

Genomic Locations for LOC111946240 Gene
chr10:-
(GRCh38/hg38)
Orientation:
Unknown strand

Genomic View for LOC111946240 Gene


Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for LOC111946240 Gene

No data available for GeneHancer (GH) Regulatory Elements for LOC111946240 Gene

Proteins for LOC111946240 Gene

Post-translational modifications for LOC111946240 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC111946240 Gene

Domains & Families for LOC111946240 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC111946240 Gene

Function for LOC111946240 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC111946240 Gene

Localization for LOC111946240 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC111946240 Gene

Pathways & Interactions for LOC111946240 Gene

PathCards logo

SuperPathways for LOC111946240 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC111946240 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC111946240 Gene

Drugs & Compounds for LOC111946240 Gene

No Compound Related Data Available

Transcripts for LOC111946240 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC111946240 Gene

No ASD Table

No data available for mRNA/cDNA for LOC111946240 Gene

Expression for LOC111946240 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC111946240 Gene

Orthologs for LOC111946240 Gene

No data available for Orthologs and Evolution for LOC111946240 Gene

Paralogs for LOC111946240 Gene

No data available for Paralogs for LOC111946240 Gene

Variants for LOC111946240 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC111946240 Gene

Disorders for LOC111946240 Gene

No disorders were found for LOC111946240 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC111946240 Gene

Publications for LOC111946240 Gene

  1. Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions. (PMID: 27701403) Ernst J … Kellis M (Nature biotechnology 2016) 3 54

No data available for Mastermind for LOC111946240 Gene

Products for LOC111946240 Gene

Sources for LOC111946240 Gene