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Aliases for LOC111828517 Gene

Aliases for LOC111828517 Gene

  • Sharpr-MPRA Regulatory Regions 1971 And 3941 3
  • Sharpr-MPRA Regulatory Region 1971 3
  • Sharpr-MPRA Regulatory Region 3941 3

External Ids for LOC111828517 Gene

Summaries for LOC111828517 Gene

Entrez Gene Summary for LOC111828517 Gene

  • This genomic sequence, which overlaps the promoter and 5' region of the RAB28 (RAB28, member RAS oncogene family) gene on chromosome 4, was predicted to be a transcriptional regulatory region based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. It contains two overlapping sub-regions, one of which was validated as a functional enhancer by the Sharpr-MPRA technique (Systematic high-resolution activation and repression profiling with reporter tiling using massively parallel reporter assays) in both HepG2 liver carcinoma cells (group: HepG2 Activating DNase matched - State 1:Tss, active promoter, TSS/CpG island region) and K562 erythroleukemia cells (group: K562 Activating non-DNase unmatched - State 1:Tss). The other sub-region displayed weak repressive activity by Sharpr-MPRA in K562 cells (group: K562 Repressive DNase matched - State 1:Tss). [provided by RefSeq, Jan 2018]

GeneCards Summary for LOC111828517 Gene

LOC111828517 (Sharpr-MPRA Regulatory Regions 1971 And 3941) is a Biological Region gene.

Additional gene information for LOC111828517 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC111828517 Gene

Genomics for LOC111828517 Gene

Genomic Locations for LOC111828517 Gene

Genomic Locations for LOC111828517 Gene
chr4:-
(GRCh38/hg38)
Orientation:
Unknown strand

Genomic View for LOC111828517 Gene


Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for LOC111828517 Gene

No data available for GeneHancer (GH) Regulatory Elements for LOC111828517 Gene

Proteins for LOC111828517 Gene

Post-translational modifications for LOC111828517 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC111828517 Gene

Domains & Families for LOC111828517 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC111828517 Gene

Function for LOC111828517 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC111828517 Gene

Localization for LOC111828517 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC111828517 Gene

Pathways & Interactions for LOC111828517 Gene

PathCards logo

SuperPathways for LOC111828517 Gene

No Data Available

Interacting Proteins for LOC111828517 Gene

Gene Ontology (GO) - Biological Process for LOC111828517 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC111828517 Gene

Drugs & Compounds for LOC111828517 Gene

No Compound Related Data Available

Transcripts for LOC111828517 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC111828517 Gene

No ASD Table

No data available for mRNA/cDNA for LOC111828517 Gene

Expression for LOC111828517 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC111828517 Gene

Orthologs for LOC111828517 Gene

No data available for Orthologs and Evolution for LOC111828517 Gene

Paralogs for LOC111828517 Gene

No data available for Paralogs for LOC111828517 Gene

Variants for LOC111828517 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC111828517 Gene

Disorders for LOC111828517 Gene

No disorders were found for LOC111828517 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC111828517 Gene

Publications for LOC111828517 Gene

  1. Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions. (PMID: 27701403) Ernst J … Kellis M (Nature biotechnology 2016) 3 58

No data available for External Links for LOC111828517 Gene

Products for LOC111828517 Gene

Sources for LOC111828517 Gene

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