This genomic sequence was predicted to be a transcriptional regulatory region based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. One sub-region was validated as a functional enhancer by the Sharpr-MPRA technique (Systematic high-resolution activation and repression profiling with reporter tiling using massively parallel reporter assays) in... See more...

Aliases for LOC111828491 Gene

Aliases for LOC111828491 Gene

  • Sharpr-MPRA Regulatory Regions 262 And 14493 3
  • Sharpr-MPRA Regulatory Region 14493 3
  • Sharpr-MPRA Regulatory Region 262 3

External Ids for LOC111828491 Gene

Summaries for LOC111828491 Gene

Entrez Gene Summary for LOC111828491 Gene

  • This genomic sequence was predicted to be a transcriptional regulatory region based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. One sub-region was validated as a functional enhancer by the Sharpr-MPRA technique (Systematic high-resolution activation and repression profiling with reporter tiling using massively parallel reporter assays) in both HepG2 liver carcinoma cells (group: HepG2 Activating DNase unmatched - State 5:Enh, candidate strong enhancer, open chromatin) and K562 erythroleukemia cells (group: K562 Activating DNase unmatched - State 1:Tss, active promoter, TSS/CpG island region). Another overlapping sub-region also displayed weak activation by Sharpr-MPRA in K562 erythroleukemia cells (group: K562 Activating DNase unmatched - State 1:Tss). [provided by RefSeq, Jan 2018]

GeneCards Summary for LOC111828491 Gene

LOC111828491 (Sharpr-MPRA Regulatory Regions 262 And 14493) is a Biological Region gene.

Additional gene information for LOC111828491 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC111828491 Gene

Genomics for LOC111828491 Gene

Genomic Locations for LOC111828491 Gene

Genomic Locations for LOC111828491 Gene
chr19:-
(GRCh38/hg38)
Orientation:
Unknown strand

Genomic View for LOC111828491 Gene


Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for LOC111828491 Gene

No data available for GeneHancer (GH) Regulatory Elements for LOC111828491 Gene

Proteins for LOC111828491 Gene

Post-translational modifications for LOC111828491 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC111828491 Gene

Domains & Families for LOC111828491 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC111828491 Gene

Function for LOC111828491 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC111828491 Gene

Localization for LOC111828491 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC111828491 Gene

Pathways & Interactions for LOC111828491 Gene

PathCards logo

SuperPathways for LOC111828491 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC111828491 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC111828491 Gene

Drugs & Compounds for LOC111828491 Gene

No Compound Related Data Available

Transcripts for LOC111828491 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC111828491 Gene

No ASD Table

No data available for mRNA/cDNA for LOC111828491 Gene

Expression for LOC111828491 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC111828491 Gene

Orthologs for LOC111828491 Gene

No data available for Orthologs and Evolution for LOC111828491 Gene

Paralogs for LOC111828491 Gene

No data available for Paralogs for LOC111828491 Gene

Variants for LOC111828491 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC111828491 Gene

Disorders for LOC111828491 Gene

No disorders were found for LOC111828491 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC111828491 Gene

Publications for LOC111828491 Gene

  1. Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions. (PMID: 27701403) Ernst J … Kellis M (Nature biotechnology 2016) 3 54

No data available for Mastermind for LOC111828491 Gene

Products for LOC111828491 Gene

Sources for LOC111828491 Gene