Aliases for LOC107985177 Gene

Data sources for LOC107985177 Gene:

Subcategory (RNA class) for LOC107985177 Gene

lncRNA

Aliases for LOC107985177 Gene

External Ids for LOC107985177 Gene

Previous GeneCards Identifiers for LOC107985177 Gene

  • GC18U901195

Summaries for LOC107985177 Gene

GeneCards Summary for LOC107985177 Gene

LOC107985177 (Uncharacterized LOC107985177) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC107985177 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC107985177 Gene

Genomics for LOC107985177 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC107985177 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J075454 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 250.7 +0.5 453 2.6 FOXA2 SPI1 BHLHE40 ZFX EZH2 ENSG00000266774 LOC107985177 SMIM21 TSHZ1 ENSG00000286603 lnc-TSHZ1-4 LOC105372204
GH18J075467 Enhancer 0.4 Ensembl 0.4 +12.5 12498 0.9 ATF2 CREB1 EZH2 ENSG00000286603 ENSG00000266774 SMIM21 LOC107985177 LOC105372204
GH18J075462 Enhancer 0.3 Ensembl 0.4 +7.4 7430 0.6 CTCF ENSG00000266774 SMIM21 LOC107985177 ENSG00000286603 LOC105372204
GH18J075444 Enhancer 0.2 Ensembl 0.4 -11.3 -11270 0.4 HSALNG0122508 ENSG00000266774 SMIM21 LOC107985177 lnc-TSHZ1-4 TSHZ1
GH18J075440 Enhancer 0.2 Ensembl 0.4 -13.9 -13860 0.9 HSALNG0122508 ENSG00000266774 SMIM21 LOC107985177 lnc-TSHZ1-4 TSHZ1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC107985177 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC107985177 Gene

Latest Assembly
chr18:75,455,271-75,469,071
(GRCh38/hg38)
Size:
13,801 bases
Orientation:
Plus strand

Genomic View for LOC107985177 Gene

Genes around LOC107985177 on UCSC Golden Path with GeneCards custom track
LOC107985177 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC107985177 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC107985177 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC107985177 Gene

Proteins for LOC107985177 Gene

Post-translational modifications for LOC107985177 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC107985177 Gene

Domains & Families for LOC107985177 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC107985177 Gene

Function for LOC107985177 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC107985177 Gene

Localization for LOC107985177 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC107985177 Gene

Pathways & Interactions for LOC107985177 Gene

PathCards logo

SuperPathways for LOC107985177 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC107985177 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC107985177 Gene

Drugs & Compounds for LOC107985177 Gene

No Compound Related Data Available

Transcripts for LOC107985177 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC107985177 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EED940_9606 lncRNA 5372 1

Ensembl: ENST00000657893 (view in UCSC) ,

URS00009B3737_9606 lncRNA 3924 2

LncBook: HSALNT0253220,

NONCODE: NONHSAT178028.1,

URS0000D590E9_9606 lncRNA 2373 2

LncBook: HSALNT0253218,

LNCipedia: lnc-TSHZ1-4:5,

URS00008B4693_9606 lncRNA 839 2

LncBook: HSALNT0253222,

LNCipedia: lnc-TSHZ1-4:1,

URS0001BF13A7_9606 lncRNA 8311 1

LncBook: HSALNT0253209,

LOC107985177 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC107985177 Gene

No ASD Table

Relevant External Links for LOC107985177 Gene

GeneLoc Exon Structure for
LOC107985177

No data available for mRNA/cDNA for LOC107985177 Gene

Expression for LOC107985177 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC107985177 Gene

Orthologs for LOC107985177 Gene

Evolution for LOC107985177 Gene

ENSEMBL:
Gene Tree for LOC107985177 (if available)
TreeFam:
Gene Tree for LOC107985177 (if available)

No data available for Orthologs for LOC107985177 Gene

Paralogs for LOC107985177 Gene

No data available for Paralogs for LOC107985177 Gene

Variants for LOC107985177 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC107985177 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC107985177 Gene

Disorders for LOC107985177 Gene

No disorders were found for LOC107985177 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC107985177 Gene

Publications for LOC107985177 Gene

No publications were found for LOC107985177 Gene.

No data available for Mastermind for LOC107985177 Gene

Products for LOC107985177 Gene

Sources for LOC107985177 Gene