Aliases for LOC107985164 Gene

Data sources for LOC107985164 Gene:

Subcategory (RNA class) for LOC107985164 Gene

lncRNA

Aliases for LOC107985164 Gene

External Ids for LOC107985164 Gene

Previous GeneCards Identifiers for LOC107985164 Gene

  • GC18U901202
  • GC18P055998

Summaries for LOC107985164 Gene

GeneCards Summary for LOC107985164 Gene

LOC107985164 (Uncharacterized LOC107985164) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC107985164 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC107985164 Gene

Genomics for LOC107985164 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC107985164 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J055892 Promoter 0.9 Ensembl 250.7 +0.6 563 1.6 MNT IKZF1 NONO TAF9B SUPT5H FOXK2 NRF1 EP400 EGR1 TAF7 LOC107985164 HSALNG0121711 LINC01416 TCF4 WDR7
GH18J055862 Promoter/Enhancer 1.5 VISTA UCNEbase Ensembl ENCODE CraniofacialAtlas 0.3 -28.1 -28062 4.7 NRF1 RFX1 RNF2 BMI1 NR2F2 ENSG00000287944 LOC105372131 LINC01415 LOC107985164 TCF4 WDR7
GH18J055900 Enhancer 0.8 VISTA UCNEbase Ensembl 0.4 +7.9 7911 1.3 EP300 LOC642484 LOC107985164 HSALNG0121711 LINC01416 TCF4 WDR7
GH18J055875 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.4 -15.8 -15762 4.2 GABPA SPI1 POLR2A NFATC1 RUNX3 CEBPB EZH2 ENSG00000287944 LOC107985164 TCF4 WDR7
GH18J055907 Enhancer 0.6 ENCODE CraniofacialAtlas 0.4 +15.2 15236 2.4 FEZF1 TRIM28 PRDM10 CTCF WT1 LOC107985164 HSALNG0121711 LINC01416 TCF4 WDR7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC107985164 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC107985164 Gene

Latest Assembly
chr18:55,893,037-56,029,129
(GRCh38/hg38)
Size:
136,093 bases
Orientation:
Plus strand

Previous Assembly
chr18:53,560,269-53,690,753
(GRCh37/hg19 by Ensembl)
Size:
130,485 bases
Orientation:
Plus strand

Genomic View for LOC107985164 Gene

Genes around LOC107985164 on UCSC Golden Path with GeneCards custom track
LOC107985164 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC107985164 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC107985164 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC107985164 Gene

Proteins for LOC107985164 Gene

Post-translational modifications for LOC107985164 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC107985164 Gene

Domains & Families for LOC107985164 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC107985164 Gene

Function for LOC107985164 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC107985164 Gene

Localization for LOC107985164 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC107985164 Gene

Pathways & Interactions for LOC107985164 Gene

PathCards logo

SuperPathways for LOC107985164 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC107985164 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC107985164 Gene

Drugs & Compounds for LOC107985164 Gene

No Compound Related Data Available

Transcripts for LOC107985164 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC107985164 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000037CE3B_9606 lncRNA 518 4

Ensembl: ENST00000589440 (view in UCSC) ,

LncBook: HSALNT0251569,

LNCipedia: lnc-WDR7-6:2,

NONCODE: NONHSAT059387.2,

URS0000378689_9606 lncRNA 492 4

Ensembl: ENST00000588803 (view in UCSC) ,

LncBook: HSALNT0251575,

LNCipedia: lnc-WDR7-6:3,

NONCODE: NONHSAT059388.2,

URS0000EF48E8_9606 lncRNA 3061 1

Ensembl: ENST00000666716 (view in UCSC) ,

URS00008B3191_9606 lncRNA 1505 3

LncBook: HSALNT0251580,

LNCipedia: lnc-WDR7-6:1,

NONCODE: NONHSAT059391.2,

URS00008BFBED_9606 lncRNA 612 2

LNCipedia: lnc-WDR7-6:4,

NONCODE: NONHSAT059392.2,

LOC107985164 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC107985164 Gene

No ASD Table

Relevant External Links for LOC107985164 Gene

GeneLoc Exon Structure for
LOC107985164

No data available for mRNA/cDNA for LOC107985164 Gene

Expression for LOC107985164 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC107985164 Gene

Orthologs for LOC107985164 Gene

Evolution for LOC107985164 Gene

ENSEMBL:
Gene Tree for LOC107985164 (if available)
TreeFam:
Gene Tree for LOC107985164 (if available)

No data available for Orthologs for LOC107985164 Gene

Paralogs for LOC107985164 Gene

No data available for Paralogs for LOC107985164 Gene

Variants for LOC107985164 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC107985164 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC107985164 Gene

Disorders for LOC107985164 Gene

Additional Disease Information for LOC107985164

Open Targets Platform
Open Targets Platform

No disorders were found for LOC107985164 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC107985164 Gene

Publications for LOC107985164 Gene

No publications were found for LOC107985164 Gene.

No data available for Mastermind for LOC107985164 Gene

Products for LOC107985164 Gene

Sources for LOC107985164 Gene