Aliases for LOC107984399 Gene

Subcategory (RNA class) for LOC107984399 Gene


Number of RNA Genes sources:

3 / 17

Aliases for LOC107984399 Gene

  • Uncharacterized LOC107984399 3
  • Novel Transcript, Antisense To TRIM29 5
  • NONHSAG009845.2 91
  • HSALNG0087688 164
  • AP000679.1 5
  • Lnc-OAF-3 165

External Ids for LOC107984399 Gene

Previous GeneCards Identifiers for LOC107984399 Gene

  • GC11U902803

Summaries for LOC107984399 Gene

GeneCards Summary for LOC107984399 Gene

LOC107984399 (Uncharacterized LOC107984399) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC107984399 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC107984399 Gene

Genomics for LOC107984399 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC107984399 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J120168 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.4 370 1.7 HNRNPL CTCF TEAD4 POLR2A REST EZH2 GTF2F1 NONO MGA ZFX LOC107984399 OAF RNF26 TRIM29 NECTIN1
GH11J120207 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.9 +42.3 42275 7.1 HNRNPL GATAD2A PRDM10 NFKBIZ RCOR2 BACH1 JUND LARP7 PRDM1 RBFOX2 OAF POU2F3 TRIM29 LOC107984399 ARHGEF12 GRIK4 lnc-POU2F3-2
GH11J120195 Enhancer 1.2 ENCODE CraniofacialAtlas dbSUPER 12.7 +29.9 29924 7.6 HNRNPL GATAD2A ZIC2 RBFOX2 POLR2A RXRB IRF2 SP1 CEBPA SCRT2 OAF LOC107984399 TLCD5 TRIM29 LOC105369530
GH11J120217 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 12 +50.9 50943 4.8 HNRNPL GATAD2A ZIC2 RXRB SOX13 MAFF USF1 KAT7 YY1 MAFK POU2F3 TRIM29 LOC107984399 RNF26 TLCD5 TBCEL OAF lnc-POU2F3-2 lnc-TRIM29-3
GH11J120224 Enhancer 0.9 ENCODE CraniofacialAtlas dbSUPER 12.5 +56.7 56724 2.6 CTCF TCF12 RBM22 SPI1 GABPA POLR2A IKZF1 MYC MAX GABPB1 LOC107984399 OAF lnc-TRIM29-3 POU2F3 lnc-POU2F3-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC107984399 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC107984399 Gene

Genomic Locations for LOC107984399 Gene
13,907 bases
Plus strand
2,703 bases
Plus strand

Genomic View for LOC107984399 Gene

Genes around LOC107984399 on UCSC Golden Path with GeneCards custom track
LOC107984399 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC107984399 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC107984399 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC107984399 Gene

Proteins for LOC107984399 Gene

Post-translational modifications for LOC107984399 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC107984399 Gene

Domains & Families for LOC107984399 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC107984399 Gene

Function for LOC107984399 Gene

Phenotypes From GWAS Catalog for LOC107984399 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC107984399 Gene

Localization for LOC107984399 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC107984399 Gene

Pathways & Interactions for LOC107984399 Gene

PathCards logo

SuperPathways for LOC107984399 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC107984399 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC107984399 Gene

Drugs & Compounds for LOC107984399 Gene

No Compound Related Data Available

Transcripts for LOC107984399 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC107984399 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007CF3D4_9606 lncRNA 555 3

Ensembl: ENST00000530303 (view in UCSC) ,

LncBook: HSALNT0182193,

LNCipedia: lnc-OAF-3:3,

URS00007C83E3_9606 lncRNA 2081 2

Ensembl: ENST00000319763 (view in UCSC) ,

LNCipedia: lnc-OAF-3:2,

URS0000E60A39_9606 lncRNA 2083 1

RefSeq: NR_159965,

URS00008BA2BC_9606 lncRNA 596 3

LncBook: HSALNT0182192,

LNCipedia: lnc-OAF-3:1,


LOC107984399 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC107984399 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC107984399 Gene

No ASD Table

Relevant External Links for LOC107984399 Gene

GeneLoc Exon Structure for

Expression for LOC107984399 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC107984399

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC107984399 Gene

Orthologs for LOC107984399 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC107984399 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 31
  • 98 (a)
Species where no ortholog for LOC107984399 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LOC107984399 Gene

Gene Tree for LOC107984399 (if available)
Gene Tree for LOC107984399 (if available)

Paralogs for LOC107984399 Gene

No data available for Paralogs for LOC107984399 Gene

Variants for LOC107984399 Gene

Additional dbSNP identifiers (rs#s) for LOC107984399 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC107984399 Gene

Disorders for LOC107984399 Gene

No disorders were found for LOC107984399 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC107984399 Gene

Publications for LOC107984399 Gene

  1. Genetic variants near PDGFRA are associated with corneal curvature in Australians. (PMID: 22969067) Mishra A … Mackey DA (Investigative ophthalmology & visual science 2012) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC107984399 Gene

Products for LOC107984399 Gene

Sources for LOC107984399 Gene