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Aliases for LOC105379464 Gene

Subcategory (RNA class) for LOC105379464 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105379464 Gene

  • Uncharacterized LOC105379464 3

External Ids for LOC105379464 Gene

Previous GeneCards Identifiers for LOC105379464 Gene

  • GC16U902083

Summaries for LOC105379464 Gene

GeneCards Summary for LOC105379464 Gene

LOC105379464 (Uncharacterized LOC105379464) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379464 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105379464 Gene

Genomics for LOC105379464 Gene

GeneHancer (GH) Regulatory Elements for LOC105379464 Gene

Promoters and enhancers for LOC105379464 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J028750 Promoter 0.9 Ensembl 600.7 +1.5 1530 1.4 MAFK ZNF600 ZIC2 TARDBP ZNF316 SCRT2 MGA SCRT1 ZNF18 ZNF687 PIR34162 LOC105379464 PAWRP2 NPIPB9
GH16J028747 Promoter 0.5 Ensembl 600.7 -1.9 -1870 0.2 LOC105379464 PIR51296 APOBR PIR47207 NPIPB9
GH16J028751 Promoter 0.5 EPDnew 0.7 +2.9 2870 0.1 PIR34162 PAWRP2 NPIPB9 PIR45382 LOC105379464
GH16J028759 Promoter 0.5 EPDnew 0.4 +10.6 10560 0.1 NPIPB9 PIRC87 PIR45382 LOC105379464
GH16J028758 Enhancer 0.2 Ensembl 0.4 +9.3 9330 0.2 PIR45382 PIRC87 LOC105379464 NPIPB9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379464 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379464 Gene

Genomic Locations for LOC105379464 Gene
chr16:28,748,971-28,774,040
(GRCh38/hg38)
Size:
25,070 bases
Orientation:
Plus strand

Genomic View for LOC105379464 Gene

Genes around LOC105379464 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379464 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379464 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379464 Gene

Proteins for LOC105379464 Gene

Post-translational modifications for LOC105379464 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379464 Gene

Domains & Families for LOC105379464 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105379464 Gene

Function for LOC105379464 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379464 Gene

Localization for LOC105379464 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379464 Gene

Pathways & Interactions for LOC105379464 Gene

PathCards logo

SuperPathways for LOC105379464 Gene

No Data Available

Interacting Proteins for LOC105379464 Gene

Gene Ontology (GO) - Biological Process for LOC105379464 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105379464 Gene

Drugs & Compounds for LOC105379464 Gene

No Compound Related Data Available

Transcripts for LOC105379464 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379464 Gene

No ASD Table

Relevant External Links for LOC105379464 Gene

GeneLoc Exon Structure for
LOC105379464

No data available for mRNA/cDNA for LOC105379464 Gene

Expression for LOC105379464 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379464 Gene

Orthologs for LOC105379464 Gene

No data available for Orthologs and Evolution for LOC105379464 Gene

Paralogs for LOC105379464 Gene

No data available for Paralogs for LOC105379464 Gene

Variants for LOC105379464 Gene

Sequence variations from dbSNP and Humsavar for LOC105379464 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000541732 -- 28,750,305(+) A/G intron_variant
rs1001161887 -- 28,750,723(+) T/C intron_variant
rs1001212922 -- 28,755,172(+) A/G intron_variant
rs1001994500 -- 28,749,382(+) T/A/C intron_variant
rs1002213521 -- 28,750,169(+) G/A/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379464 Gene

Disorders for LOC105379464 Gene

No disorders were found for LOC105379464 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379464 Gene

Publications for LOC105379464 Gene

No publications were found for LOC105379464 Gene.

No data available for External Links for LOC105379464 Gene

Products for LOC105379464 Gene

Sources for LOC105379464 Gene

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