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Aliases for LOC105379407 Gene

Subcategory (RNA class) for LOC105379407 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105379407 Gene

  • Uncharacterized LOC105379407 3
  • AP000439.2 5

External Ids for LOC105379407 Gene

Previous GeneCards Identifiers for LOC105379407 Gene

  • GC11U902401

Summaries for LOC105379407 Gene

GeneCards Summary for LOC105379407 Gene

LOC105379407 (Uncharacterized LOC105379407) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379407 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105379407 Gene

Genomics for LOC105379407 Gene

GeneHancer (GH) Regulatory Elements for LOC105379407 Gene

Promoters and enhancers for LOC105379407 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I069478 Enhancer 1.2 Ensembl ENCODE dbSUPER 550.8 0.0 -45 3 PKNOX1 CLOCK FOXA2 NFIB ARID4B SIN3A ZBTB7B RFX5 SCRT2 SP5 LOC105379407 LINC01488 GC11P069470
GH11I069477 Enhancer 0.6 ENCODE dbSUPER 0.8 +2.5 2493 1.5 ATF1 RFX1 LOC105379407 GC11P069470
GH11I069476 Enhancer 0.5 ENCODE dbSUPER 0.8 +3.8 3762 0.1 POU5F1 LOC105379407 GC11P069470
GH11I069485 Enhancer 0.7 ENCODE 0.4 -5.5 -5548 0.2 SOX5 SOX13 PKNOX1 ZNF687 SAP130 MLX NFYC THRB RAD21 YY1 LINC01488 LOC105379407 GC11P069470
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105379407 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379407 Gene

Genomic Locations for LOC105379407 Gene
chr11:69,475,604-69,479,940
(GRCh38/hg38)
Size:
4,337 bases
Orientation:
Minus strand
chr11:69,291,901-69,294,708
(GRCh37/hg19)

Genomic View for LOC105379407 Gene

Genes around LOC105379407 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379407 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379407 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379407 Gene

Proteins for LOC105379407 Gene

Post-translational modifications for LOC105379407 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379407 Gene

Domains & Families for LOC105379407 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105379407 Gene

Function for LOC105379407 Gene

Phenotypes From GWAS Catalog for LOC105379407 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379407 Gene

Localization for LOC105379407 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379407 Gene

Pathways & Interactions for LOC105379407 Gene

SuperPathways for LOC105379407 Gene

No Data Available

Interacting Proteins for LOC105379407 Gene

Gene Ontology (GO) - Biological Process for LOC105379407 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105379407 Gene

Drugs & Compounds for LOC105379407 Gene

No Compound Related Data Available

Transcripts for LOC105379407 Gene

mRNA/cDNA for LOC105379407 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379407 Gene

No ASD Table

Relevant External Links for LOC105379407 Gene

GeneLoc Exon Structure for
LOC105379407

Expression for LOC105379407 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379407 Gene

Orthologs for LOC105379407 Gene

Evolution for LOC105379407 Gene

ENSEMBL:
Gene Tree for LOC105379407 (if available)
TreeFam:
Gene Tree for LOC105379407 (if available)

No data available for Orthologs for LOC105379407 Gene

Paralogs for LOC105379407 Gene

No data available for Paralogs for LOC105379407 Gene

Variants for LOC105379407 Gene

Sequence variations from dbSNP and Humsavar for LOC105379407 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000040968 -- 69,480,690(-) C/A upstream_transcript_variant
rs1000046052 -- 69,479,790(-) A/G non_coding_transcript_variant
rs1000151435 -- 69,480,236(-) G/C upstream_transcript_variant
rs1000527480 -- 69,477,306(-) C/T non_coding_transcript_variant
rs1001193871 -- 69,475,470(-) G/T downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379407 Gene

Disorders for LOC105379407 Gene

No disorders were found for LOC105379407 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379407 Gene

Publications for LOC105379407 Gene

No publications were found for LOC105379407 Gene.

Products for LOC105379407 Gene

Sources for LOC105379407 Gene

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