Aliases for LOC105379396 Gene

Subcategory (RNA class) for LOC105379396 Gene

ncRNA

Aliases for LOC105379396 Gene

  • Uncharacterized LOC105379396 3

External Ids for LOC105379396 Gene

Previous GeneCards Identifiers for LOC105379396 Gene

  • GC08U902174

Summaries for LOC105379396 Gene

GeneCards Summary for LOC105379396 Gene

LOC105379396 (Uncharacterized LOC105379396) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379396 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105379396 Gene

Genomics for LOC105379396 Gene

GeneHancer (GH) Regulatory Elements for LOC105379396 Gene

Promoters and enhancers for LOC105379396 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J042718 Enhancer 1 Ensembl ENCODE 0.7 -3.7 -3684 4 TCF12 FOS TCF7 CTBP1 SKI TEAD1 TBX3 NCOR1 ZNF282 FOXA2 ENSG00000255101 RF00017-7015 POMK CHRNB3 LOC105379396 RF00017-7012
GH08J042708 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.4 +5.4 5396 8.2 SMAD4 BCL6 RARA NR2F6 SP1 piR-48161 HOOK3 RNF170 IKBKB LOC105379396 piR-48224 ENSG00000255101 CHRNB3 RF00017-7012
GH08J042695 Promoter/Enhancer 0.9 EPDnew Ensembl 0.4 +19.9 19896 3.6 FOS IKZF1 GATA2 TBX21 CEBPB JUN ZNF677 HLF IKZF2 RUNX3 CHRNB3 piR-50443-361 LOC105379396 RF00017-7012
GH08J042703 Enhancer 0.7 Ensembl 0.4 +12.8 12769 1.7 JUND ZNF316 NBN NFE2 BATF IRF4 NFE2L1 EBF1 IKZF1 NR2F1 piR-44160 piR-49951 piR-55641-004 HOOK3 RNF170 CHRNB3 LOC105379396 RF00017-7012
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379396 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379396 Gene

Genomic Locations for LOC105379396 Gene
chr8:42,695,922-42,717,097
(GRCh38/hg38)
Size:
21,176 bases
Orientation:
Minus strand

Genomic View for LOC105379396 Gene

Genes around LOC105379396 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379396 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379396 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379396 Gene

Proteins for LOC105379396 Gene

Post-translational modifications for LOC105379396 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379396 Gene

Domains & Families for LOC105379396 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105379396 Gene

Function for LOC105379396 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379396 Gene

Localization for LOC105379396 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379396 Gene

Pathways & Interactions for LOC105379396 Gene

PathCards logo

SuperPathways for LOC105379396 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC105379396 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105379396 Gene

Drugs & Compounds for LOC105379396 Gene

No Compound Related Data Available

Transcripts for LOC105379396 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379396 Gene

No ASD Table

Relevant External Links for LOC105379396 Gene

GeneLoc Exon Structure for
LOC105379396

No data available for mRNA/cDNA for LOC105379396 Gene

Expression for LOC105379396 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379396 Gene

Orthologs for LOC105379396 Gene

No data available for Orthologs and Evolution for LOC105379396 Gene

Paralogs for LOC105379396 Gene

No data available for Paralogs for LOC105379396 Gene

Variants for LOC105379396 Gene

Additional dbSNP identifiers (rs#s) for LOC105379396 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379396 Gene

Disorders for LOC105379396 Gene

No disorders were found for LOC105379396 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379396 Gene

Publications for LOC105379396 Gene

No publications were found for LOC105379396 Gene.

No data available for Mastermind for LOC105379396 Gene

Products for LOC105379396 Gene

Sources for LOC105379396 Gene