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Aliases for LOC105379346 Gene

Subcategory (RNA class) for LOC105379346 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105379346 Gene

  • Uncharacterized LOC105379346 3

External Ids for LOC105379346 Gene

Previous GeneCards Identifiers for LOC105379346 Gene

  • GC08U902377

Summaries for LOC105379346 Gene

GeneCards Summary for LOC105379346 Gene

LOC105379346 (Uncharacterized LOC105379346) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379346 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105379346 Gene

Genomics for LOC105379346 Gene

GeneHancer (GH) Regulatory Elements for LOC105379346 Gene

Promoters and enhancers for LOC105379346 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J029032 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 600.7 +1.7 1743 9 ZNF121 CTCF RAD21 PKNOX1 USF1 STAT1 ZNF623 NR2F2 USF2 CEBPB LOC105379346 KIF13B HMBOX1 INTS9 ENSG00000254129 HMBOX1-IT1
GH08J029023 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.0 11043 8.4 ZNF121 MAFK PRDM1 ZIC2 ZSCAN4 POLR2A ZNF316 ELF1 MAFG ZNF592 KIF13B HMBOX1 INTS9 ENSG00000254129 INTS9-AS1 DUSP4 LOC105379346 HMBOX1-IT1
GH08J029016 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +20.2 20220 1.6 SP1 RXRA JUND YY1 ZBTB33 GABPA HNF4A MAX REST ATF3 KIF13B LOC105379346 HMBOX1-IT1 HMBOX1
GH08J029045 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 -11.1 -11119 4.3 ZNF585B GLIS1 RNA5SP260 GC08M029049 KIF13B ENSG00000254129 LOC105379346 HMBOX1
GH08J029003 Enhancer 1 ENCODE dbSUPER 0.3 +32.9 32945 1.6 CC2D1A CTCF RELA CREM PRDM1 RAD21 IKZF1 RXRA IKZF2 REST LOC105379346 HMBOX1-IT1 HMBOX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379346 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379346 Gene

Genomic Locations for LOC105379346 Gene
chr8:29,015,033-29,037,444
(GRCh38/hg38)
Size:
22,412 bases
Orientation:
Minus strand

Genomic View for LOC105379346 Gene

Genes around LOC105379346 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379346 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379346 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379346 Gene

Proteins for LOC105379346 Gene

Post-translational modifications for LOC105379346 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379346 Gene

Domains & Families for LOC105379346 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105379346 Gene

Function for LOC105379346 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379346 Gene

Localization for LOC105379346 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379346 Gene

Pathways & Interactions for LOC105379346 Gene

PathCards logo

SuperPathways for LOC105379346 Gene

No Data Available

Interacting Proteins for LOC105379346 Gene

Gene Ontology (GO) - Biological Process for LOC105379346 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105379346 Gene

Drugs & Compounds for LOC105379346 Gene

No Compound Related Data Available

Transcripts for LOC105379346 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379346 Gene

No ASD Table

Relevant External Links for LOC105379346 Gene

GeneLoc Exon Structure for
LOC105379346

No data available for mRNA/cDNA for LOC105379346 Gene

Expression for LOC105379346 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379346 Gene

Orthologs for LOC105379346 Gene

No data available for Orthologs and Evolution for LOC105379346 Gene

Paralogs for LOC105379346 Gene

No data available for Paralogs for LOC105379346 Gene

Variants for LOC105379346 Gene

Sequence variations from dbSNP and Humsavar for LOC105379346 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000048361 -- 29,019,659(-) T/C intron_variant
rs1000112608 -- 29,039,740(-) T/A/C upstream_transcript_variant
rs1000440491 -- 29,029,112(-) C/A/T intron_variant
rs1000783859 -- 29,031,219(-) G/A non_coding_transcript_variant
rs1000820851 -- 29,038,987(-) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379346 Gene

Disorders for LOC105379346 Gene

No disorders were found for LOC105379346 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379346 Gene

Publications for LOC105379346 Gene

No publications were found for LOC105379346 Gene.

No data available for External Links for LOC105379346 Gene

Products for LOC105379346 Gene

Sources for LOC105379346 Gene

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