Aliases for LOC105379343 Gene

Subcategory (RNA class) for LOC105379343 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105379343 Gene

  • Uncharacterized LOC105379343 3

External Ids for LOC105379343 Gene

Previous GeneCards Identifiers for LOC105379343 Gene

  • GC08U902394

Summaries for LOC105379343 Gene

GeneCards Summary for LOC105379343 Gene

LOC105379343 (Uncharacterized LOC105379343) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379343 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105379343 Gene

Genomics for LOC105379343 Gene

GeneHancer (GH) Regulatory Elements for LOC105379343 Gene

Promoters and enhancers for LOC105379343 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J028183 Enhancer 1.1 Ensembl ENCODE 0.4 -5.8 -5827 9.8 SMARCE1 ETV6 MAX TEAD4 BCL6B CBFA2T2 SP7 SMARCA4 PRDM1 CREM ELP3 CLU LOC105379343 LOC100131127
GH08J028165 Enhancer 0.8 Ensembl 0.4 +17.1 17078 0.4 MLX RBPJ NR2F1 NR2F6 MIXL1 HLF ZNF652 RERE ELF3 TFE3 ELP3 LOC105379343 L13714-434
GH08J028203 Enhancer 0.9 Ensembl ENCODE 0.3 -20.8 -20822 1.4 SMARCE1 TEAD4 CBFA2T2 SMARCA4 DPF2 PRDM10 HDAC1 LEF1 JUND SOX6 ELP3 LOC100131127 LOC105379343
GH08J028199 Enhancer 0.8 Ensembl ENCODE 0.4 -16.5 -16466 1.9 ZNF217 ZNF121 PRDM1 TARDBP CTBP1 PKNOX1 DPF2 BCOR GATAD2B RCOR1 ELP3 LOC105379343 LOC100131127
GH08J028166 Enhancer 0.7 Ensembl ENCODE 0.4 +15.7 15747 1.5 NR2F6 FOXA1 FOXA2 TEAD1 MAFK FOXA3 ELP3 LOC105379343 L13714-434
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379343 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379343 Gene

Genomic Locations for LOC105379343 Gene
chr8:28,177,505-28,182,479
(GRCh38/hg38)
Size:
4,975 bases
Orientation:
Minus strand

Genomic View for LOC105379343 Gene

Genes around LOC105379343 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379343 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379343 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379343 Gene

Proteins for LOC105379343 Gene

Post-translational modifications for LOC105379343 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379343 Gene

Domains & Families for LOC105379343 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105379343 Gene

Function for LOC105379343 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379343 Gene

Localization for LOC105379343 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379343 Gene

Pathways & Interactions for LOC105379343 Gene

PathCards logo

SuperPathways for LOC105379343 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105379343 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105379343 Gene

Drugs & Compounds for LOC105379343 Gene

No Compound Related Data Available

Transcripts for LOC105379343 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379343 Gene

No ASD Table

Relevant External Links for LOC105379343 Gene

GeneLoc Exon Structure for
LOC105379343

No data available for mRNA/cDNA for LOC105379343 Gene

Expression for LOC105379343 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379343 Gene

Orthologs for LOC105379343 Gene

No data available for Orthologs and Evolution for LOC105379343 Gene

Paralogs for LOC105379343 Gene

No data available for Paralogs for LOC105379343 Gene

Variants for LOC105379343 Gene

Sequence variations from dbSNP and Humsavar for LOC105379343 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000121765 -- 28,182,138(-) G/A intron_variant
rs1000425510 -- 28,183,473(-) G/T upstream_transcript_variant
rs1000654343 -- 28,178,917(-) G/A intron_variant
rs1000720695 -- 28,177,412(-) G/A downstream_transcript_variant
rs1000848905 -- 28,183,172(-) G/A/C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379343 Gene

Disorders for LOC105379343 Gene

No disorders were found for LOC105379343 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379343 Gene

Publications for LOC105379343 Gene

No publications were found for LOC105379343 Gene.

No data available for External Links for LOC105379343 Gene

Products for LOC105379343 Gene

Sources for LOC105379343 Gene