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Aliases for LOC105379336 Gene

Subcategory (RNA class) for LOC105379336 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105379336 Gene

  • Uncharacterized LOC105379336 3

External Ids for LOC105379336 Gene

Previous GeneCards Identifiers for LOC105379336 Gene

  • GC08U902038

Summaries for LOC105379336 Gene

GeneCards Summary for LOC105379336 Gene

LOC105379336 (Uncharacterized LOC105379336) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379336 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105379336 Gene

Genomics for LOC105379336 Gene

GeneHancer (GH) Regulatory Elements for LOC105379336 Gene

Promoters and enhancers for LOC105379336 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J026207 Enhancer 0.3 dbSUPER 650.7 -0.9 -853 0.7 ZNF680 LOC105379336 PPP2R2A LOC100129404
GH08J026206 Enhancer 0.2 dbSUPER 650.7 +0.3 317 0.5 LOC105379336 PPP2R2A RNA5SP258
GH08J026203 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 +2.2 2166 1.4 JUN USF2 ZNF398 EP300 BRCA1 ATF2 FOXA1 MITF SP1 GATA3 PPP2R2A LOC105379336 RNA5SP258
GH08J026202 Enhancer 0.8 ENCODE dbSUPER 0.7 +4.5 4525 0.1 FOXA2 RXRA FOXA3 FEZF1 ZBTB40 FOXA1 YY1 SP1 ZNF664 JUND LOC105379336 RNA5SP258
GH08J026189 Enhancer 0.9 ENCODE dbSUPER 0.4 +17.4 17368 0.5 SIX4 MAX ZEB2 BCL11B ZEB1 HIC1 ZSCAN21 ZFP69B ZNF664 ATF4 LOC105379336 RNA5SP258
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379336 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379336 Gene

Genomic Locations for LOC105379336 Gene
chr8:26,136,157-26,206,775
(GRCh38/hg38)
Size:
70,619 bases
Orientation:
Minus strand

Genomic View for LOC105379336 Gene

Genes around LOC105379336 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379336 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379336 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379336 Gene

Proteins for LOC105379336 Gene

Post-translational modifications for LOC105379336 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379336 Gene

Domains & Families for LOC105379336 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105379336 Gene

Function for LOC105379336 Gene

Phenotypes From GWAS Catalog for LOC105379336 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379336 Gene

Localization for LOC105379336 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379336 Gene

Pathways & Interactions for LOC105379336 Gene

SuperPathways for LOC105379336 Gene

No Data Available

Interacting Proteins for LOC105379336 Gene

Gene Ontology (GO) - Biological Process for LOC105379336 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105379336 Gene

Drugs & Compounds for LOC105379336 Gene

No Compound Related Data Available

Transcripts for LOC105379336 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379336 Gene

No ASD Table

Relevant External Links for LOC105379336 Gene

GeneLoc Exon Structure for
LOC105379336

No data available for mRNA/cDNA for LOC105379336 Gene

Expression for LOC105379336 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379336 Gene

Orthologs for LOC105379336 Gene

No data available for Orthologs and Evolution for LOC105379336 Gene

Paralogs for LOC105379336 Gene

No data available for Paralogs for LOC105379336 Gene

Variants for LOC105379336 Gene

Sequence variations from dbSNP and Humsavar for LOC105379336 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000006906 -- 26,158,640(-) C/T genic_upstream_transcript_variant, intron_variant
rs1000030589 -- 26,203,462(-) C/A genic_upstream_transcript_variant, intron_variant
rs1000043701 -- 26,177,162(-) T/C genic_upstream_transcript_variant, intron_variant
rs1000084342 -- 26,210,426(-) G/A upstream_transcript_variant
rs1000103026 -- 26,168,515(-) A/T genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379336 Gene

Disorders for LOC105379336 Gene

No disorders were found for LOC105379336 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379336 Gene

Publications for LOC105379336 Gene

No publications were found for LOC105379336 Gene.

Products for LOC105379336 Gene

Sources for LOC105379336 Gene

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