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Aliases for LOC105379332 Gene

Subcategory (RNA class) for LOC105379332 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105379332 Gene

  • Uncharacterized LOC105379332 3
  • AC009623.1 5

External Ids for LOC105379332 Gene

Previous GeneCards Identifiers for LOC105379332 Gene

  • GC08U902277

Summaries for LOC105379332 Gene

GeneCards Summary for LOC105379332 Gene

LOC105379332 (Uncharacterized LOC105379332) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379332 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105379332 Gene

Genomics for LOC105379332 Gene

GeneHancer (GH) Regulatory Elements for LOC105379332 Gene

Promoters and enhancers for LOC105379332 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J026575 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.6 +892.1 892108 5.2 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B ZNF766 E2F8 DPYSL2 LOC100132229 RNA5SP258 ENSG00000253342 LOC105379332 PNMA2 LOC105379337 SDAD1P1 PSME2P5 GC08M026683
GH08J026447 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 14.6 +764.7 764687 5.4 HDGF PKNOX1 CLOCK NEUROD1 SIN3A FOS SP3 NFYC ZNF610 SMARCA4 SDAD1P1 RNA5SP258 LOC100132229 ENSG00000253342 LOC105379332 PNMA2 DPYSL2 BNIP3L LOC105379337
GH08J025997 Enhancer 1 dbSUPER 14.6 +313.1 313109 3 PKNOX1 FEZF1 ZNF2 YY1 ZNF121 ZNF213 KLF7 KLF13 SP3 RXRA GNRH1 RNA5SP258 ENSG00000253342 LOC105379332 ENSG00000253476 EBF2 KCTD9 GC08M025942
GH08J025508 Enhancer 0.7 ENCODE 14.6 -176.7 -176707 0.6 PKNOX1 ARNT MZF1 ZNF384 FEZF1 ZIC2 BCL11B ETS1 CTBP1 TCF7L2 LOC105379332 ENSG00000253342 RNA5SP258 CDCA2 KCTD9 GC08P025504 GC08P025588
GH08J025689 Enhancer 0.5 ENCODE 13.3 +4.7 4737 1.4 JUND USF1 ZIC2 ZBTB17 LOC105379332 GC08P025748
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379332 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379332 Gene

Genomic Locations for LOC105379332 Gene
chr8:25,685,798-25,688,759
(GRCh38/hg38)
Size:
2,962 bases
Orientation:
Plus strand
chr8:25,543,314-25,545,040
(GRCh37/hg19)
Size:
1,727 bases
Orientation:
Plus strand

Genomic View for LOC105379332 Gene

Genes around LOC105379332 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379332 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379332 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379332 Gene

Proteins for LOC105379332 Gene

Post-translational modifications for LOC105379332 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379332 Gene

Domains & Families for LOC105379332 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105379332 Gene

Function for LOC105379332 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379332 Gene

Localization for LOC105379332 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379332 Gene

Pathways & Interactions for LOC105379332 Gene

SuperPathways for LOC105379332 Gene

No Data Available

Interacting Proteins for LOC105379332 Gene

Gene Ontology (GO) - Biological Process for LOC105379332 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105379332 Gene

Drugs & Compounds for LOC105379332 Gene

No Compound Related Data Available

Transcripts for LOC105379332 Gene

mRNA/cDNA for LOC105379332 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379332 Gene

No ASD Table

Relevant External Links for LOC105379332 Gene

GeneLoc Exon Structure for
LOC105379332

Expression for LOC105379332 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379332 Gene

Orthologs for LOC105379332 Gene

Evolution for LOC105379332 Gene

ENSEMBL:
Gene Tree for LOC105379332 (if available)
TreeFam:
Gene Tree for LOC105379332 (if available)

No data available for Orthologs for LOC105379332 Gene

Paralogs for LOC105379332 Gene

No data available for Paralogs for LOC105379332 Gene

Variants for LOC105379332 Gene

Sequence variations from dbSNP and Humsavar for LOC105379332 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000499698 -- 25,684,351(+) G/A upstream_transcript_variant
rs1001151397 -- 25,684,102(+) G/C upstream_transcript_variant
rs1001361501 -- 25,689,310(+) T/C downstream_transcript_variant
rs1002161820 -- 25,687,563(+) C/T non_coding_transcript_variant
rs1002340697 -- 25,684,684(+) A/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379332 Gene

Disorders for LOC105379332 Gene

No disorders were found for LOC105379332 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379332 Gene

Publications for LOC105379332 Gene

No publications were found for LOC105379332 Gene.

Products for LOC105379332 Gene

Sources for LOC105379332 Gene

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