Aliases for LOC105379330 Gene

Subcategory (RNA class) for LOC105379330 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105379330 Gene

  • Uncharacterized LOC105379330 3
  • CTD-2168K21.1 3

External Ids for LOC105379330 Gene

Previous GeneCards Identifiers for LOC105379330 Gene

  • GC08U901960

Summaries for LOC105379330 Gene

GeneCards Summary for LOC105379330 Gene

LOC105379330 (Uncharacterized LOC105379330) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379330 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105379330 Gene

Genomics for LOC105379330 Gene

GeneHancer (GH) Regulatory Elements for LOC105379330 Gene

Promoters and enhancers for LOC105379330 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J024998 Promoter/Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas 0.4 +8.2 8223 3.7 CTCF ZNF362 CC2D1A RAD21 POLR2A SP1 ZNF384 MAFK SP7 PRDM1 ENSG00000288055 NEFM ENSG00000253535 ENSG00000253832 LOC105379330
GH08J024994 Enhancer 0.8 Ensembl ENCODE 0.6 +3.2 3181 2.1 ZSCAN4 ZSCAN5C ZXDB PRDM4 KLF8 RCOR1 ZNF18 FOSL2 CEBPG ZNF366 ENSG00000253535 NEFM ENSG00000253832 LOC105379330 ENSG00000288055
GH08J025002 Enhancer 0.8 FANTOM5 ENCODE 0.4 +11.6 11580 1.7 MAFK SP7 ZEB2 ZNF629 NFE2 ZSCAN5C ZBTB48 ZFHX2 PRDM6 BACH1 NEFM ENSG00000253535 ENSG00000288055 piR-56037-079 LOC105379330 ENSG00000253832
GH08J025007 Enhancer 0.5 Ensembl 0.4 +15.8 15824 1 SP7 CEBPB EP300 PRDM1 ZNF580 STAT3 RCOR1 PRDM6 piR-56037-079 NEFM ENSG00000253535 ENSG00000253832 lnc-NEFM-3 LOC105379330
GH08J024996 Enhancer 0.3 Ensembl 0.6 +4.6 4624 0.6 ZNF664 ENSG00000253535 NEFM ENSG00000253832 ENSG00000288055 LOC105379330
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379330 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379330 Gene

Genomic Locations for LOC105379330 Gene
chr8:24,991,877-25,009,973
(GRCh38/hg38)
Size:
18,097 bases
Orientation:
Plus strand

Genomic View for LOC105379330 Gene

Genes around LOC105379330 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379330 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379330 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379330 Gene

Proteins for LOC105379330 Gene

Post-translational modifications for LOC105379330 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379330 Gene

Domains & Families for LOC105379330 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105379330 Gene

Function for LOC105379330 Gene

Phenotypes From GWAS Catalog for LOC105379330 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379330 Gene

Localization for LOC105379330 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379330 Gene

Pathways & Interactions for LOC105379330 Gene

PathCards logo

SuperPathways for LOC105379330 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105379330 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105379330 Gene

Drugs & Compounds for LOC105379330 Gene

No Compound Related Data Available

Transcripts for LOC105379330 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379330 Gene

No ASD Table

Relevant External Links for LOC105379330 Gene

GeneLoc Exon Structure for
LOC105379330

No data available for mRNA/cDNA for LOC105379330 Gene

Expression for LOC105379330 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379330 Gene

Orthologs for LOC105379330 Gene

No data available for Orthologs and Evolution for LOC105379330 Gene

Paralogs for LOC105379330 Gene

No data available for Paralogs for LOC105379330 Gene

Variants for LOC105379330 Gene

Sequence variations from dbSNP and Humsavar for LOC105379330 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000020247 -- 25,003,578(+) G/A/C/T intron_variant
rs1000205786 -- 24,994,425(+) C/A intron_variant
rs1000704890 -- 24,991,410(+) C/T upstream_transcript_variant
rs1000822264 -- 24,998,535(+) A/G/T intron_variant
rs1000879407 -- 24,998,768(+) T/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379330 Gene

Disorders for LOC105379330 Gene

No disorders were found for LOC105379330 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379330 Gene

Publications for LOC105379330 Gene

No publications were found for LOC105379330 Gene.

No data available for External Links for LOC105379330 Gene

Products for LOC105379330 Gene

Sources for LOC105379330 Gene