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Aliases for LOC105379311 Gene

Subcategory (RNA class) for LOC105379311 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105379311 Gene

  • Uncharacterized LOC105379311 3

External Ids for LOC105379311 Gene

Previous GeneCards Identifiers for LOC105379311 Gene

  • GC08U902157

Summaries for LOC105379311 Gene

GeneCards Summary for LOC105379311 Gene

LOC105379311 (Uncharacterized LOC105379311) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379311 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105379311 Gene

Genomics for LOC105379311 Gene

GeneHancer (GH) Regulatory Elements for LOC105379311 Gene

Promoters and enhancers for LOC105379311 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J020085 Enhancer 0.9 FANTOM5 ENCODE 0.4 +8.1 8111 2 CEBPA GABPA CEBPB CHD2 EP300 NR2C2 STAT3 NR2F2 TCF7L2 USF2 ATP6V1B2 CSGALNACT1 ENSG00000253775 LOC105379311 LOC105379310
GH08J020102 Promoter/Enhancer 0.9 Ensembl ENCODE 0.3 +25.1 25076 1.8 ETS1 NANOG POU5F1 ENSG00000253775 INTS10 LOC105379310 LOC105379311
GH08J020119 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 +44.5 44462 8 ZNF121 CTCF RAD21 REST ZNF24 SP1 JUND FOS FOSL1 SMC3 ENSG00000253775 INTS10 CSGALNACT1 ATP6V1B2 LOC105379312 RPL30P9 LOC105379311
GH08J020074 Enhancer 0.4 ENCODE 0.7 -4.3 -4269 0.8 NR2F2 HLF LPL LOC105379311 GC08M019958
GH08J020061 Enhancer 0.6 Ensembl ENCODE 0.4 -16.3 -16339 2.8 CEBPB EP300 NR2F2 PSD3 LOC105379311 GC08M019958
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379311 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379311 Gene

Genomic Locations for LOC105379311 Gene
chr8:20,078,739-20,125,001
(GRCh38/hg38)
Size:
46,263 bases
Orientation:
Plus strand

Genomic View for LOC105379311 Gene

Genes around LOC105379311 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379311 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379311 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379311 Gene

Proteins for LOC105379311 Gene

Post-translational modifications for LOC105379311 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379311 Gene

Domains & Families for LOC105379311 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105379311 Gene

Function for LOC105379311 Gene

Phenotypes From GWAS Catalog for LOC105379311 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379311 Gene

Localization for LOC105379311 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379311 Gene

Pathways & Interactions for LOC105379311 Gene

PathCards logo

SuperPathways for LOC105379311 Gene

No Data Available

Interacting Proteins for LOC105379311 Gene

Gene Ontology (GO) - Biological Process for LOC105379311 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105379311 Gene

Drugs & Compounds for LOC105379311 Gene

No Compound Related Data Available

Transcripts for LOC105379311 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379311 Gene

No ASD Table

Relevant External Links for LOC105379311 Gene

GeneLoc Exon Structure for
LOC105379311

No data available for mRNA/cDNA for LOC105379311 Gene

Expression for LOC105379311 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379311 Gene

Orthologs for LOC105379311 Gene

No data available for Orthologs and Evolution for LOC105379311 Gene

Paralogs for LOC105379311 Gene

No data available for Paralogs for LOC105379311 Gene

Variants for LOC105379311 Gene

Sequence variations from dbSNP and Humsavar for LOC105379311 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000148227 -- 20,081,246(+) G/A intron_variant
rs1000180861 -- 20,098,821(+) A/G intron_variant
rs1000207630 -- 20,082,283(+) G/T intron_variant
rs1000294410 -- 20,118,834(+) G/A intron_variant
rs1000341880 -- 20,094,790(+) T/A/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379311 Gene

Disorders for LOC105379311 Gene

No disorders were found for LOC105379311 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379311 Gene

Publications for LOC105379311 Gene

No publications were found for LOC105379311 Gene.

No data available for External Links for LOC105379311 Gene

Products for LOC105379311 Gene

Sources for LOC105379311 Gene

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