LOC105379311 Gene (RNA Gene)

Uncharacterized LOC105379311

GC08P020078
GIFtS:
2
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Aliases for LOC105379311 Gene

Data sources for LOC105379311 Gene:

Subcategory (RNA class) for LOC105379311 Gene

ncRNA

Aliases for LOC105379311 Gene

External Ids for LOC105379311 Gene

Previous GeneCards Identifiers for LOC105379311 Gene

  • GC08U902157

Summaries for LOC105379311 Gene

GeneCards Summary for LOC105379311 Gene

LOC105379311 (Uncharacterized LOC105379311) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379311 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105379311 Gene

Genomics for LOC105379311 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC105379311 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH08J020085 Promoter/Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 +8.1 8136 2 CEBPA CEBPB EP300 GABPA STAT3 TCF7L2 USF2 TEAD4 NR2F6 GATA2 ATP6V1B2 CSGALNACT1 ENSG00000253775 LOC105379311 lnc-ATP6V1B2-2 HSALNG0063789 SLC18A1 LPL
GH08J020119 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.3 +44.5 44487 8 CTCF REST SMC3 RAD21 FOSL1 JUND ZNF384 ZNF24 FOS ZNF121 L13714-423 ENSG00000253775 INTS10 CSGALNACT1 ATP6V1B2 HSALNG0063791 LOC105379312 LOC105379311 SLC18A1 LPL
GH08J020074 Enhancer 0.3 ENCODE 0.7 -4.2 -4244 0.8 HLF NR2F2 LPL LOC105379311 HSALNG0063787 SLC18A1
GH08J020081 Promoter 0.3 Ensembl 0.7 +3.4 3387 1 ENSG00000253775 LOC105379311 lnc-ATP6V1B2-2 HSALNG0063789 SLC18A1 LPL
GH08J020061 Enhancer 0.6 Ensembl ENCODE 0.4 -16.0 -16013 2.2 CEBPB EP300 NR2F2 PSD3 HSALNG0063787 HSALNG0063786 LOC105379311 SLC18A1 LPL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379311 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105379311 Gene

Latest Assembly
chr8:20,078,714-20,121,033
(GRCh38/hg38)
Size:
42,320 bases
Orientation:
Plus strand

Genomic View for LOC105379311 Gene

Genes around LOC105379311 on UCSC Golden Path with GeneCards custom track
LOC105379311 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105379311 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379311 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105379311 Gene

Proteins for LOC105379311 Gene

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  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LOC105379311 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379311 Gene

Domains & Families for LOC105379311 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105379311 Gene

Function for LOC105379311 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379311 Gene

Localization for LOC105379311 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379311 Gene

Pathways & Interactions for LOC105379311 Gene

PathCards logo

SuperPathways for LOC105379311 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105379311 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105379311 Gene

Drugs & Compounds for LOC105379311 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for LOC105379311 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research
LOC105379311 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379311 Gene

No ASD Table

Relevant External Links for LOC105379311 Gene

GeneLoc Exon Structure for
LOC105379311

No data available for mRNA/cDNA for LOC105379311 Gene

Expression for LOC105379311 Gene

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  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379311 Gene

Orthologs for LOC105379311 Gene

No data available for Orthologs and Evolution for LOC105379311 Gene

Paralogs for LOC105379311 Gene

No data available for Paralogs for LOC105379311 Gene

Variants for LOC105379311 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105379311 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379311 Gene

Disorders for LOC105379311 Gene

No disorders were found for LOC105379311 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379311 Gene

Publications for LOC105379311 Gene

No publications were found for LOC105379311 Gene.

No data available for Mastermind for LOC105379311 Gene

Products for LOC105379311 Gene

Sources for LOC105379311 Gene