Aliases for LOC105379308 Gene
Subcategory (RNA class) for LOC105379308 Gene
ncRNA
Quality Score for this RNA gene is
13
Aliases for LOC105379308 Gene
- Uncharacterized LOC105379308 3
External Ids for LOC105379308 Gene
- Entrez Gene: 105379308
Previous GeneCards Identifiers for LOC105379308 Gene
- GC08U902478
Summaries for LOC105379308 Gene
GeneCards Summary for LOC105379308 Gene
LOC105379308 (Uncharacterized LOC105379308) is an RNA Gene, and is affiliated with the ncRNA class.
Additional gene information for LOC105379308 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105379308 Gene
Genomics for LOC105379308 Gene
GeneHancer (GH) Regulatory Elements for LOC105379308 Gene
Promoters and enhancers for LOC105379308 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH08J019550 | Enhancer | 0.2 | Ensembl | 750.6 | +1.3 | 1303 | 1.6 | LOC105379308 CSGALNACT1 PSD3 piR-46501-095 lnc-SLC18A1-3 | ||
| GH08J019602 | Promoter/Enhancer | 1.7 | EPDnew Ensembl ENCODE CraniofacialAtlas | 0.2 | +52.7 | 52703 | 1.2 | RAD21 KLF14 GLIS2 ZIC2 ZSCAN4 ZEB2 PATZ1 ZXDB ZBTB17 PRDM4 | CSGALNACT1 INTS10 SH2D4A piR-46501-095 LOC105379308 lnc-SLC18A1-3 | |
| GH08J019577 | Enhancer | 1 | FANTOM5 Ensembl ENCODE | 0.3 | +28.4 | 28422 | 5 | SIN3A POLR2A ELF1 SMARCC1 CEBPB JUN RCOR1 JUND ATF3 MAX | CSGALNACT1 LOC105379308 piR-46501-095 lnc-SLC18A1-3 | |
| GH08J019540 | Enhancer | 0.7 | FANTOM5 Ensembl | 0.4 | -8.8 | -8777 | 1 | CEBPB JUN RCOR1 JUND TCF7L2 USF2 FOSL2 FOS | CSGALNACT1 LOC105379308 LOC102724881 lnc-SLC18A1-3 | |
| GH08J019537 | Enhancer | 0.7 | Ensembl ENCODE | 0.4 | -12.3 | -12331 | 1.3 | MAFK JUN JUND MAX NFYB RFX5 MAFF | CSGALNACT1 LOC105379308 LOC102724881 lnc-SLC18A1-3 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105379308 on UCSC Golden Path with GeneCards custom track
Genomic Locations for LOC105379308 Gene
Genomic Locations for LOC105379308 Gene
- chr8:19,549,697-19,551,552
- (GRCh38/hg38)
- Size:
- 1,856 bases
- Orientation:
- Plus strand
Genomic View for LOC105379308 Gene
Genes around LOC105379308 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 8p21.3 by Entrez Gene
LOC105379308 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105379308 Gene
Proteins for LOC105379308 Gene
Post-translational modifications for LOC105379308 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105379308
- Origene Custom Protein Services for LOC105379308
No data available for DME Specific Peptides for LOC105379308 Gene
Domains & Families for LOC105379308 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105379308 Gene
Function for LOC105379308 Gene
Phenotypes From GWAS Catalog for LOC105379308 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379308 Gene
Localization for LOC105379308 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379308 Gene
Transcripts for LOC105379308 Gene
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC105379308 Gene
- GeneLoc Exon Structure for
- LOC105379308
No data available for mRNA/cDNA for LOC105379308 Gene
Expression for LOC105379308 Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379308 Gene
Orthologs for LOC105379308 Gene
No data available for Orthologs and Evolution for LOC105379308 Gene
Paralogs for LOC105379308 Gene
No data available for Paralogs for LOC105379308 Gene
Variants for LOC105379308 Gene
| SNP ID | Clin | Chr 08 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000740511 | -- | 19,548,362(+) | C/T | upstream_transcript_variant | |
| rs1001085311 | -- | 19,551,818(+) | A/G | downstream_transcript_variant | |
| rs1001498656 | -- | 19,551,395(+) | T/C | non_coding_transcript_variant | |
| rs1002249863 | -- | 19,550,659(+) | G/A | intron_variant | |
| rs1002633494 | -- | 19,550,344(+) | C/G | intron_variant |
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379308 Gene
Disorders for LOC105379308 Gene
No disorders were found for LOC105379308 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379308 Gene
Publications for LOC105379308 Gene
No publications were found for LOC105379308 Gene.
No data available for External Links for LOC105379308 Gene
Products for LOC105379308 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105379308
- Origene Custom Protein Services for LOC105379308
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- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC105379308
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- Lentiviral ORF Clones
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- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC105379308
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Sources for LOC105379308 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
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- (122) UDN
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- (125) ENCODE
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- (127) Horizon
- (128) NURSA
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- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource