Aliases for LOC105379308 Gene

Data sources for LOC105379308 Gene:

Subcategory (RNA class) for LOC105379308 Gene

ncRNA

Aliases for LOC105379308 Gene

External Ids for LOC105379308 Gene

Previous GeneCards Identifiers for LOC105379308 Gene

  • GC08U902478

Summaries for LOC105379308 Gene

GeneCards Summary for LOC105379308 Gene

LOC105379308 (Uncharacterized LOC105379308) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379308 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105379308 Gene

Genomics for LOC105379308 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105379308 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J019550 Enhancer 0.2 Ensembl 250.7 +1.3 1304 1.6 HSALNG0063761 HSALNG0063762 LOC105379308 CSGALNACT1 PSD3 HSALNG0063763 lnc-SLC18A1-3 SH2D4A
GH08J019540 Enhancer 0.6 FANTOM5 Ensembl 0.4 -8.7 -8707 0.9 CEBPB TCF7L2 USF2 FOS CSGALNACT1 HSALNG0063761 LOC105379308 HSALNG0063759 lnc-SLC18A1-3 SH2D4A
GH08J019537 Enhancer 0.6 Ensembl ENCODE 0.4 -12.4 -12430 1.1 MAX RFX5 JUND MAFF MAFK CSGALNACT1 HSALNG0063761 LOC105379308 HSALNG0063759 lnc-SLC18A1-3 SH2D4A
GH08J019450 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.2 -93.6 -93595 13.8 CEBPA ZIC2 THAP11 FOXA2 ZNF511 MAFF SMAD4 SAP130 ETV4 GABPB1 CSGALNACT1 INTS10 HSALNG0063759 LOC105379308 SH2D4A
GH08J019496 Promoter/Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.2 -52.5 -52521 1.6 CSGALNACT1 LOC105379308 HSALNG0063759 SH2D4A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379308 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105379308 Gene

Latest Assembly
chr8:19,549,696-19,551,552
(GRCh38/hg38)
Size:
1,857 bases
Orientation:
Plus strand

Genomic View for LOC105379308 Gene

Genes around LOC105379308 on UCSC Golden Path with GeneCards custom track
LOC105379308 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105379308 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379308 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379308 Gene

Proteins for LOC105379308 Gene

Post-translational modifications for LOC105379308 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379308 Gene

Domains & Families for LOC105379308 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105379308 Gene

Function for LOC105379308 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379308 Gene

Localization for LOC105379308 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379308 Gene

Pathways & Interactions for LOC105379308 Gene

PathCards logo

SuperPathways for LOC105379308 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105379308 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105379308 Gene

Drugs & Compounds for LOC105379308 Gene

No Compound Related Data Available

Transcripts for LOC105379308 Gene

LOC105379308 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379308 Gene

No ASD Table

Relevant External Links for LOC105379308 Gene

GeneLoc Exon Structure for
LOC105379308

No data available for mRNA/cDNA for LOC105379308 Gene

Expression for LOC105379308 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379308 Gene

Orthologs for LOC105379308 Gene

No data available for Orthologs and Evolution for LOC105379308 Gene

Paralogs for LOC105379308 Gene

No data available for Paralogs for LOC105379308 Gene

Variants for LOC105379308 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105379308 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379308 Gene

Disorders for LOC105379308 Gene

No disorders were found for LOC105379308 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379308 Gene

Publications for LOC105379308 Gene

No publications were found for LOC105379308 Gene.

No data available for Mastermind for LOC105379308 Gene

Products for LOC105379308 Gene

Sources for LOC105379308 Gene