Aliases for LOC105379194 Gene

Subcategory (RNA class) for LOC105379194 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC105379194 Gene

  • Uncharacterized LOC105379194 3
  • HSALNG0045199 167
  • NONHSAG041682 92
  • Lnc-LRRTM2-1 168

External Ids for LOC105379194 Gene

Previous GeneCards Identifiers for LOC105379194 Gene

  • GC05U902550

Summaries for LOC105379194 Gene

GeneCards Summary for LOC105379194 Gene

LOC105379194 (Uncharacterized LOC105379194) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105379194 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105379194 Gene

Genomics for LOC105379194 Gene

GeneHancer (GH) Regulatory Elements for LOC105379194 Gene

Promoters and enhancers for LOC105379194 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J138752 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +0.0 31 3.5 ZNF217 EP300 CTCF SIN3A POLR2G NCOR1 PHF8 JUND FOS ZFX ENSG00000253404 LOC105379194 lnc-EGR1-3 CTNNA1 HNRNPA0 KDM3B MATR3 RPL7P19 REEP2 DNAJC18
GH05J138748 Enhancer 0.7 Ensembl 0.4 +5.3 5296 0.8 ZSCAN5C JUND CTBP1 FOXA2 SMARCC1 ZNF184 FOS JUN FOSL1 ZNF335 ENSG00000253404 HSPA9 CTNNA1 LOC105379194 RF00017-4931
GH05J138759 Enhancer 0.3 Ensembl 0.4 -5.8 -5804 0.2 ZBTB33 ZNF362 ENSG00000253404 CTNNA1 HSPA9 lnc-EGR1-4 LOC105379194 lnc-EGR1-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379194 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379194 Gene

Genomic Locations for LOC105379194 Gene
chr5:138,744,429-138,754,097
(GRCh38/hg38)
Size:
9,669 bases
Orientation:
Minus strand

Genomic View for LOC105379194 Gene

Genes around LOC105379194 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379194 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379194 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379194 Gene

Proteins for LOC105379194 Gene

Post-translational modifications for LOC105379194 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379194 Gene

Domains & Families for LOC105379194 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105379194 Gene

Function for LOC105379194 Gene

Phenotypes From GWAS Catalog for LOC105379194 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379194 Gene

Localization for LOC105379194 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379194 Gene

Pathways & Interactions for LOC105379194 Gene

PathCards logo

SuperPathways for LOC105379194 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC105379194 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105379194 Gene

Drugs & Compounds for LOC105379194 Gene

No Compound Related Data Available

Transcripts for LOC105379194 Gene

mRNA/cDNA for LOC105379194 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379194 Gene

No ASD Table

Relevant External Links for LOC105379194 Gene

GeneLoc Exon Structure for
LOC105379194

Expression for LOC105379194 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379194 Gene

Orthologs for LOC105379194 Gene

No data available for Orthologs and Evolution for LOC105379194 Gene

Paralogs for LOC105379194 Gene

No data available for Paralogs for LOC105379194 Gene

Variants for LOC105379194 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC105379194 Gene

SNP ID Clinical significance and condition Chr 05 pos Variation AA Info Type
rs529217936 Likely Benign: Hereditary cancer-predisposing syndrome 138,753,541(-) G/C NON_CODING_TRANSCRIPT_VARIANT,INTRON_VARIANT
rs869312570 Likely Benign: Hereditary cancer-predisposing syndrome 138,753,833(-) G/A NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for LOC105379194 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379194 Gene

Disorders for LOC105379194 Gene

No disorders were found for LOC105379194 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379194 Gene

Publications for LOC105379194 Gene

No publications were found for LOC105379194 Gene.

No data available for Mastermind for LOC105379194 Gene

Products for LOC105379194 Gene

Sources for LOC105379194 Gene