Aliases for LOC105379192 Gene

Subcategory (RNA class) for LOC105379192 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC105379192 Gene

  • Uncharacterized LOC105379192 3
  • HSALNG0045112 167
  • NONHSAG041641 92
  • Lnc-MYOT-66 168

External Ids for LOC105379192 Gene

Previous GeneCards Identifiers for LOC105379192 Gene

  • GC05U902238

Summaries for LOC105379192 Gene

GeneCards Summary for LOC105379192 Gene

LOC105379192 (Uncharacterized LOC105379192) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105379192 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105379192 Gene

Genomics for LOC105379192 Gene

GeneHancer (GH) Regulatory Elements for LOC105379192 Gene

Promoters and enhancers for LOC105379192 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J137141 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +17.8 17836 7.8 ZNF217 EP300 ZSCAN5C FOS ZFX CLOCK TRIM28 RFX1 CUX1 CTBP1 SPOCK1 LOC105379192 piR-57133-496 lnc-SPOCK1-1
GH05J137114 Enhancer 0.6 Ensembl 0.4 -12.6 -12564 1.4 GABPA FOSL2 NFE2 FOSL1 ZFHX2 SKIL FOS PKNOX1 SCRT1 ATF4 LOC105379192 HSALNG0045110 SPOCK1 lnc-SPOCK1-1
GH05J137136 Enhancer 0.5 Ensembl 0.4 +10.0 10036 0.6 NCOR1 TAL1 TCF12 TEAD4 ARID1B CBFA2T2 CBFA2T3 LOC105379192 piR-57133-496 SPOCK1 lnc-SPOCK1-1
GH05J137155 Enhancer 0.6 Ensembl CraniofacialAtlas 0.3 +28.5 28491 1.3 RFX1 CUX1 NR2F2 BMI1 EZH2 LOC105379192 piR-57133-496 SPOCK1 lnc-SPOCK1-1
GH05J137091 Enhancer 0.7 Ensembl ENCODE 0.3 -35.9 -35864 2.8 WT1 PKNOX1 ZNF529 ZNF664 GLIS1 FOSL1 ZNF143 MZF1 ZNF561 KLHL3 SPOCK1 HSALNG0045110 LOC105379192
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379192 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379192 Gene

Genomic Locations for LOC105379192 Gene
chr5:137,127,265-137,131,116
(GRCh38/hg38)
Size:
3,852 bases
Orientation:
Plus strand

Genomic View for LOC105379192 Gene

Genes around LOC105379192 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379192 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379192 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379192 Gene

Proteins for LOC105379192 Gene

Post-translational modifications for LOC105379192 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379192 Gene

Domains & Families for LOC105379192 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105379192 Gene

Function for LOC105379192 Gene

Phenotypes From GWAS Catalog for LOC105379192 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379192 Gene

Localization for LOC105379192 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379192 Gene

Pathways & Interactions for LOC105379192 Gene

PathCards logo

SuperPathways for LOC105379192 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC105379192 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105379192 Gene

Drugs & Compounds for LOC105379192 Gene

No Compound Related Data Available

Transcripts for LOC105379192 Gene

mRNA/cDNA for LOC105379192 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379192 Gene

No ASD Table

Relevant External Links for LOC105379192 Gene

GeneLoc Exon Structure for
LOC105379192

Expression for LOC105379192 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379192 Gene

Orthologs for LOC105379192 Gene

No data available for Orthologs and Evolution for LOC105379192 Gene

Paralogs for LOC105379192 Gene

No data available for Paralogs for LOC105379192 Gene

Variants for LOC105379192 Gene

Additional dbSNP identifiers (rs#s) for LOC105379192 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379192 Gene

Disorders for LOC105379192 Gene

No disorders were found for LOC105379192 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379192 Gene

Publications for LOC105379192 Gene

No publications were found for LOC105379192 Gene.

No data available for Mastermind for LOC105379192 Gene

Products for LOC105379192 Gene

Sources for LOC105379192 Gene