Aliases for LOC105379188 Gene

Subcategory (RNA class) for LOC105379188 Gene

ncRNA

Aliases for LOC105379188 Gene

  • Uncharacterized LOC105379188 3
  • CTC-276P9.3 3

External Ids for LOC105379188 Gene

Previous GeneCards Identifiers for LOC105379188 Gene

  • GC05U902174

Summaries for LOC105379188 Gene

GeneCards Summary for LOC105379188 Gene

LOC105379188 (Uncharacterized LOC105379188) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379188 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105379188 Gene

Genomics for LOC105379188 Gene

GeneHancer (GH) Regulatory Elements for LOC105379188 Gene

Promoters and enhancers for LOC105379188 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J135132 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.5 -5478 12.4 NRF1 POLR2G NCOR1 JUND PHB2 FOS ZBTB5 ZIC2 ZNF263 ZBTB11 SMAD5 PITX1 DDX46 CATSPER3 DCANP1 ENSG00000248482 LOC105379188 ENSG00000248753 piR-56037-012 C5orf66
GH05J135126 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 +3.1 3121 3.6 POLR2G JUND FOS EP300 TEAD1 OSR2 FOXA2 ZBTB17 SMARCC1 FOSL2 ENSG00000248482 LOC105379188 ENSG00000248753 C5orf66
GH05J135153 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -24.3 -24293 4.8 EP300 FOXK2 POLR2G NCOR1 PHB2 KDM6A TCF7 FOXA1 ZBTB25 MYC DDX46 SEC24A SMAD5 CATSPER3 C5orf66 PITX1 LOC105379188 piR-56037-012
GH05J135159 Enhancer 0.9 ENCODE dbSUPER 0.3 -26.8 -26804 0.2 PHB2 MYC RBM25 NCOR1 NFIC TRIM24 HDAC1 TRIM28 BCOR TAL1 CATSPER3 LOC105379188 piR-56037-012 C5orf66
GH05J135172 Enhancer 1 Ensembl dbSUPER 0.3 -43.0 -42979 0.6 ZBTB11 REST MYC LEF1 NCOR1 KDM5B NEUROD1 ZNF316 ARNT TBL1XR1 piR-56037-012 LOC105379188 C5orf66
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379188 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379188 Gene

Genomic Locations for LOC105379188 Gene
chr5:135,122,067-135,131,322
(GRCh38/hg38)
Size:
9,256 bases
Orientation:
Minus strand

Genomic View for LOC105379188 Gene

Genes around LOC105379188 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379188 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379188 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379188 Gene

Proteins for LOC105379188 Gene

Post-translational modifications for LOC105379188 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379188 Gene

Domains & Families for LOC105379188 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105379188 Gene

Function for LOC105379188 Gene

Phenotypes From GWAS Catalog for LOC105379188 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379188 Gene

Localization for LOC105379188 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379188 Gene

Pathways & Interactions for LOC105379188 Gene

PathCards logo

SuperPathways for LOC105379188 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC105379188 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105379188 Gene

Drugs & Compounds for LOC105379188 Gene

No Compound Related Data Available

Transcripts for LOC105379188 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379188 Gene

No ASD Table

Relevant External Links for LOC105379188 Gene

GeneLoc Exon Structure for
LOC105379188

No data available for mRNA/cDNA for LOC105379188 Gene

Expression for LOC105379188 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379188 Gene

Orthologs for LOC105379188 Gene

No data available for Orthologs and Evolution for LOC105379188 Gene

Paralogs for LOC105379188 Gene

No data available for Paralogs for LOC105379188 Gene

Variants for LOC105379188 Gene

Additional dbSNP identifiers (rs#s) for LOC105379188 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379188 Gene

Disorders for LOC105379188 Gene

No disorders were found for LOC105379188 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379188 Gene

Publications for LOC105379188 Gene

No publications were found for LOC105379188 Gene.

No data available for Mastermind for LOC105379188 Gene

Products for LOC105379188 Gene

Sources for LOC105379188 Gene