Aliases for LOC105379040 Gene

Subcategory (RNA class) for LOC105379040 Gene

ncRNA

Aliases for LOC105379040 Gene

  • Uncharacterized LOC105379040 3

External Ids for LOC105379040 Gene

Previous GeneCards Identifiers for LOC105379040 Gene

  • GC05U902438

Summaries for LOC105379040 Gene

GeneCards Summary for LOC105379040 Gene

LOC105379040 (Uncharacterized LOC105379040) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105379040 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105379040 Gene

Genomics for LOC105379040 Gene

GeneHancer (GH) Regulatory Elements for LOC105379040 Gene

Promoters and enhancers for LOC105379040 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J074947 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 500.7 +1.0 1006 4.3 FOXK2 NCOR1 TEAD4 SKI TEAD1 ZNF316 FOXA2 MAFF SAP130 FOSL2 LOC105379040 lnc-NSA2-1 ANKRD31 GCNT4 POC5 piR-50444-367 ENSG00000249856
GH05J074945 Enhancer 1 Ensembl dbSUPER 500.7 -1.8 -1766 1.2 KDM6A ZSCAN9 FOXA2 MAFF SAP130 MAFK MIER3 JUND CREM BATF LOC105379040 lnc-NSA2-1 ENSG00000239517 ENSG00000249856
GH05J074953 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +8.2 8218 6.4 EP300 NCOR1 FOS KDM6A TCF7 SKI TEAD1 TBX3 ZKSCAN8 NR2F2 GCNT4 ANKRD31 LOC105379040 lnc-NSA2-1 piR-50444-367 ENSG00000249856
GH05J074965 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.4 +18.4 18391 1.8 ZNF677 GCNT4 piR-50444-367 LOC105379040 lnc-NSA2-1 ENSG00000249856
GH05J074968 Enhancer 0.5 Ensembl dbSUPER 0.4 +22.9 22935 0.6 TAL1 MIXL1 GCNT4 piR-50444-367 LOC105379040 lnc-NSA2-1 ENSG00000249856
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105379040 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105379040 Gene

Genomic Locations for LOC105379040 Gene
chr5:74,948,166-74,975,758
(GRCh38/hg38)
Size:
27,593 bases
Orientation:
Plus strand

Genomic View for LOC105379040 Gene

Genes around LOC105379040 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105379040 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105379040 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105379040 Gene

Proteins for LOC105379040 Gene

Post-translational modifications for LOC105379040 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105379040 Gene

Domains & Families for LOC105379040 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105379040 Gene

Function for LOC105379040 Gene

Phenotypes From GWAS Catalog for LOC105379040 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105379040 Gene

Localization for LOC105379040 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105379040 Gene

Pathways & Interactions for LOC105379040 Gene

PathCards logo

SuperPathways for LOC105379040 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC105379040 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105379040 Gene

Drugs & Compounds for LOC105379040 Gene

No Compound Related Data Available

Transcripts for LOC105379040 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105379040 Gene

No ASD Table

Relevant External Links for LOC105379040 Gene

GeneLoc Exon Structure for
LOC105379040

No data available for mRNA/cDNA for LOC105379040 Gene

Expression for LOC105379040 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC105379040

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105379040 Gene

Orthologs for LOC105379040 Gene

No data available for Orthologs and Evolution for LOC105379040 Gene

Paralogs for LOC105379040 Gene

No data available for Paralogs for LOC105379040 Gene

Variants for LOC105379040 Gene

Additional dbSNP identifiers (rs#s) for LOC105379040 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105379040 Gene

Disorders for LOC105379040 Gene

No disorders were found for LOC105379040 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105379040 Gene

Publications for LOC105379040 Gene

No publications were found for LOC105379040 Gene.

No data available for Mastermind for LOC105379040 Gene

Products for LOC105379040 Gene

Sources for LOC105379040 Gene