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Aliases for LOC105378973 Gene

Subcategory (RNA class) for LOC105378973 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378973 Gene

  • Uncharacterized LOC105378973 3
  • AC026704.1 5

External Ids for LOC105378973 Gene

Previous GeneCards Identifiers for LOC105378973 Gene

  • GC05U902516

Summaries for LOC105378973 Gene

GeneCards Summary for LOC105378973 Gene

LOC105378973 (Uncharacterized LOC105378973) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378973 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378973 Gene

Genomics for LOC105378973 Gene

GeneHancer (GH) Regulatory Elements for LOC105378973 Gene

Promoters and enhancers for LOC105378973 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J055232 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 665.8 -0.3 -294 3.3 ATF1 SIN3A GLI4 ZNF2 ZNF121 GLIS2 SP3 ZNF610 RFX3 ZSCAN16 LOC105378973 CCNO ENSG00000264281 MCIDAS
GH05J055226 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 15.5 -6.8 -6819 2.2 ARID4B SIN3A ZNF2 YY1 ZNF213 ZNF143 KLF13 SP3 REST SMARCB1 MCIDAS MTREX DHX29 SLC38A9 LOC105378973 ENSG00000249016 RNA5SP183 HNRNPH1P3 LINC01033 FLJ31104
GH05J055159 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 10.4 -73.1 -73143 2.4 FOXA2 INSM2 MZF1 SIN3A BRCA1 ZNF2 RAD21 YY1 RFX5 ZNF335 GPX8 CCNO LOC105378973 ENSG00000249016 LOC100130990 SNX18 CDC20B MIR449A
GH05J055172 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 10.2 -60.4 -60442 1 HDAC1 PKNOX1 ATF1 RB1 SIN3A BMI1 ZNF2 ZNF335 GLIS2 CREM CDC20B GC05M055174 MIR449C ENSG00000240535 LOC105378973 CCNO GC05P055180 PIR47804
GH05J055175 Enhancer 1.4 FANTOM5 Ensembl ENCODE 11.6 -57.5 -57534 1.2 ATF1 SIN3A ZNF2 ZNF48 ZNF766 GLIS2 ZNF213 ZNF143 ATF7 SP3 CCNO ENSG00000240535 LOC105378973 CDC20B GC05P055180 PIR47804
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378973 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378973 Gene

Genomic Locations for LOC105378973 Gene
chr5:55,233,934-55,295,302
(GRCh38/hg38)
Size:
61,369 bases
Orientation:
Plus strand
chr5:54,529,762-54,591,029
(GRCh37/hg19)
Size:
61,268 bases
Orientation:
Plus strand

Genomic View for LOC105378973 Gene

Genes around LOC105378973 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378973 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378973 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378973 Gene

Proteins for LOC105378973 Gene

Post-translational modifications for LOC105378973 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378973 Gene

Domains & Families for LOC105378973 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378973 Gene

Function for LOC105378973 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378973 Gene

Localization for LOC105378973 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378973 Gene

Pathways & Interactions for LOC105378973 Gene

SuperPathways for LOC105378973 Gene

No Data Available

Interacting Proteins for LOC105378973 Gene

Gene Ontology (GO) - Biological Process for LOC105378973 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378973 Gene

Drugs & Compounds for LOC105378973 Gene

No Compound Related Data Available

Transcripts for LOC105378973 Gene

mRNA/cDNA for LOC105378973 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378973 Gene

No ASD Table

Relevant External Links for LOC105378973 Gene

GeneLoc Exon Structure for
LOC105378973

Expression for LOC105378973 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378973 Gene

Orthologs for LOC105378973 Gene

Evolution for LOC105378973 Gene

ENSEMBL:
Gene Tree for LOC105378973 (if available)
TreeFam:
Gene Tree for LOC105378973 (if available)

No data available for Orthologs for LOC105378973 Gene

Paralogs for LOC105378973 Gene

No data available for Paralogs for LOC105378973 Gene

Variants for LOC105378973 Gene

Sequence variations from dbSNP and Humsavar for LOC105378973 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs193920824 uncertain-significance, Malignant tumor of prostate 55,290,250(+) T/A intron_variant
rs1000022515 -- 55,290,773(+) G/A intron_variant
rs1000023832 -- 55,295,149(+) G/A non_coding_transcript_variant
rs1000304038 -- 55,288,921(+) T/A intron_variant
rs1000578405 -- 55,292,445(+) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378973 Gene

Disorders for LOC105378973 Gene

No disorders were found for LOC105378973 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378973 Gene

Publications for LOC105378973 Gene

No publications were found for LOC105378973 Gene.

Products for LOC105378973 Gene

Sources for LOC105378973 Gene

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