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Aliases for LOC105378956 Gene
Subcategory (RNA class) for LOC105378956 Gene
ncRNA
Quality Score for this RNA gene is
13
Aliases for LOC105378956 Gene
- Uncharacterized LOC105378956 3
External Ids for LOC105378956 Gene
- Entrez Gene: 105378956
Previous GeneCards Identifiers for LOC105378956 Gene
- GC11U902474
Summaries for LOC105378956 Gene
GeneCards Summary for LOC105378956 Gene
LOC105378956 (Uncharacterized LOC105378956) is an RNA Gene, and is affiliated with the ncRNA class.
Additional gene information for LOC105378956 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378956 Gene
Genomics for LOC105378956 Gene
GeneHancer (GH) Regulatory Elements for LOC105378956 Gene
Promoters and enhancers for LOC105378956 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J120102 | Enhancer | 0.2 | FANTOM5 | 750.6 | -0.1 | -55 | 0.1 | LOC105378956 RNU6-1123P lnc-NECTIN1-4 | ||
| GH11J120096 | Enhancer | 1.2 | Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.4 | +5.3 | 5251 | 2.6 | SP7 IKZF1 PKNOX1 ZIC2 ZBTB8A ZNF316 SCRT2 EGR1 OSR2 MAFG | ENSG00000255216 RNU6-1123P ENSG00000255247 TRIM29 LOC105378956 HSALNG0087679 | |
| GH11J120119 | Enhancer | 1.1 | Ensembl ENCODE dbSUPER | 0.3 | -20.6 | -20601 | 6.3 | SMARCE1 POLR2A TCF7L2 ELF1 HLF L3MBTL2 NCOA3 SMARCA4 FOSL2 CREB1 | TRIM29 OAF GRIK4 lnc-NECTIN1-4 LOC105378956 | |
| GH11J120107 | Enhancer | 0.8 | Ensembl dbSUPER | 0.4 | -5.7 | -5714 | 2.1 | CTCF CC2D1A RAD21 ARID2 REST TRIM22 ZNF143 ZNF692 ZNF524 SCRT2 | TRIM29 RNU6-1123P ENSG00000255216 OAF LOC105378956 lnc-NECTIN1-4 | |
| GH11J120104 | Enhancer | 0.3 | dbSUPER | 0.6 | -3.5 | -3530 | 1.5 | CREB1 RCOR1 | ENSG00000255216 TRIM29 RNU6-1123P LOC105378956 lnc-NECTIN1-4 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105378956 on UCSC Golden Path with GeneCards custom track
Genomic Locations for LOC105378956 Gene
Genomic Locations for LOC105378956 Gene
- chr11:120,078,113-120,102,354
- (GRCh38/hg38)
- Size:
- 24,242 bases
- Orientation:
- Minus strand
Genomic View for LOC105378956 Gene
Genes around LOC105378956 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11q23.3 by Entrez Gene
LOC105378956 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105378956 Gene
Proteins for LOC105378956 Gene
Post-translational modifications for LOC105378956 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105378956
- Origene Custom Protein Services for LOC105378956
No data available for DME Specific Peptides for LOC105378956 Gene
Domains & Families for LOC105378956 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378956 Gene
Function for LOC105378956 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378956 Gene
Localization for LOC105378956 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378956 Gene
Transcripts for LOC105378956 Gene
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC105378956 Gene
- GeneLoc Exon Structure for
- LOC105378956
No data available for mRNA/cDNA for LOC105378956 Gene
Expression for LOC105378956 Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378956 Gene
Orthologs for LOC105378956 Gene
No data available for Orthologs and Evolution for LOC105378956 Gene
Paralogs for LOC105378956 Gene
No data available for Paralogs for LOC105378956 Gene
Variants for LOC105378956 Gene
| SNP ID | Clin | Chr 11 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000113627 | -- | 120,092,778(-) | C/T | intron_variant | |
| rs1000153478 | -- | 120,091,616(-) | T/C/G | intron_variant | |
| rs1000231699 | -- | 120,098,448(-) | G/A/T | intron_variant | |
| rs1000270607 | -- | 120,079,809(-) | C/T | genic_downstream_transcript_variant, intron_variant | |
| rs1000360364 | -- | 120,095,069(-) | T/C | intron_variant |
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378956 Gene
Disorders for LOC105378956 Gene
No disorders were found for LOC105378956 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378956 Gene
Publications for LOC105378956 Gene
No publications were found for LOC105378956 Gene.
No data available for External Links for LOC105378956 Gene
Products for LOC105378956 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105378956
- Origene Custom Protein Services for LOC105378956
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- Browse CRISPR knockouts for LOC105378956
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- Lentiviral ORF Clones
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- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC105378956
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Sources for LOC105378956 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource