Aliases for LOC105378956 Gene

Subcategory (RNA class) for LOC105378956 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378956 Gene

  • Uncharacterized LOC105378956 3

External Ids for LOC105378956 Gene

Previous GeneCards Identifiers for LOC105378956 Gene

  • GC11U902474

Summaries for LOC105378956 Gene

GeneCards Summary for LOC105378956 Gene

LOC105378956 (Uncharacterized LOC105378956) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378956 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378956 Gene

Genomics for LOC105378956 Gene

GeneHancer (GH) Regulatory Elements for LOC105378956 Gene

Promoters and enhancers for LOC105378956 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J120102 Enhancer 0.2 FANTOM5 750.6 -0.1 -55 0.1 LOC105378956 RNU6-1123P lnc-NECTIN1-4
GH11J120096 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +5.3 5251 2.6 SP7 IKZF1 PKNOX1 ZIC2 ZBTB8A ZNF316 SCRT2 EGR1 OSR2 MAFG ENSG00000255216 RNU6-1123P ENSG00000255247 TRIM29 LOC105378956 HSALNG0087679
GH11J120119 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -20.6 -20601 6.3 SMARCE1 POLR2A TCF7L2 ELF1 HLF L3MBTL2 NCOA3 SMARCA4 FOSL2 CREB1 TRIM29 OAF GRIK4 lnc-NECTIN1-4 LOC105378956
GH11J120107 Enhancer 0.8 Ensembl dbSUPER 0.4 -5.7 -5714 2.1 CTCF CC2D1A RAD21 ARID2 REST TRIM22 ZNF143 ZNF692 ZNF524 SCRT2 TRIM29 RNU6-1123P ENSG00000255216 OAF LOC105378956 lnc-NECTIN1-4
GH11J120104 Enhancer 0.3 dbSUPER 0.6 -3.5 -3530 1.5 CREB1 RCOR1 ENSG00000255216 TRIM29 RNU6-1123P LOC105378956 lnc-NECTIN1-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378956 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378956 Gene

Genomic Locations for LOC105378956 Gene
chr11:120,078,113-120,102,354
(GRCh38/hg38)
Size:
24,242 bases
Orientation:
Minus strand

Genomic View for LOC105378956 Gene

Genes around LOC105378956 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378956 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378956 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378956 Gene

Proteins for LOC105378956 Gene

Post-translational modifications for LOC105378956 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378956 Gene

Domains & Families for LOC105378956 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378956 Gene

Function for LOC105378956 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378956 Gene

Localization for LOC105378956 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378956 Gene

Pathways & Interactions for LOC105378956 Gene

PathCards logo

SuperPathways for LOC105378956 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378956 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378956 Gene

Drugs & Compounds for LOC105378956 Gene

No Compound Related Data Available

Transcripts for LOC105378956 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378956 Gene

No ASD Table

Relevant External Links for LOC105378956 Gene

GeneLoc Exon Structure for
LOC105378956

No data available for mRNA/cDNA for LOC105378956 Gene

Expression for LOC105378956 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378956 Gene

Orthologs for LOC105378956 Gene

No data available for Orthologs and Evolution for LOC105378956 Gene

Paralogs for LOC105378956 Gene

No data available for Paralogs for LOC105378956 Gene

Variants for LOC105378956 Gene

Sequence variations from dbSNP and Humsavar for LOC105378956 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000113627 -- 120,092,778(-) C/T intron_variant
rs1000153478 -- 120,091,616(-) T/C/G intron_variant
rs1000231699 -- 120,098,448(-) G/A/T intron_variant
rs1000270607 -- 120,079,809(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000360364 -- 120,095,069(-) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378956 Gene

Disorders for LOC105378956 Gene

No disorders were found for LOC105378956 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378956 Gene

Publications for LOC105378956 Gene

No publications were found for LOC105378956 Gene.

No data available for External Links for LOC105378956 Gene

Products for LOC105378956 Gene

Sources for LOC105378956 Gene