Aliases for LOC105378949 Gene

Aliases for LOC105378949 Gene

  • Collagen Alpha-2(VIII) Chain 3
  • CASP-Like Protein 4A1 3

External Ids for LOC105378949 Gene

Previous GeneCards Identifiers for LOC105378949 Gene

  • GC01U904878

Summaries for LOC105378949 Gene

GeneCards Summary for LOC105378949 Gene

LOC105378949 (Collagen Alpha-2(VIII) Chain) is a Protein Coding gene.

Additional gene information for LOC105378949 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378949 Gene

Genomics for LOC105378949 Gene

GeneHancer (GH) Regulatory Elements for LOC105378949 Gene

Promoters and enhancers for LOC105378949 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J001885 Enhancer 0.4 dbSUPER 500.7 +0.8 795 1.7 ZNF316 MAFK POLR2A LOC105378949 ENSG00000231050 TMEM52 GNB1 lnc-CALML6-2 lnc-TMEM52-1
GH01J001888 Promoter/Enhancer 2 EPDnew ENCODE CraniofacialAtlas dbSUPER 0.4 +7.0 7049 9.9 HNRNPK EP300 NRF1 POLR2G GTF2E2 PHF8 FOS ZFX ZIC2 POLR2A ENSG00000231050 GNB1 INTS11 ATAD3B CALML6 CCNL2 CDK11A UBE2J2 FAAP20 ENSG00000269737
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378949 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378949 Gene

Genomic Locations for LOC105378949 Gene
chr1:1,885,960-1,893,010
(GRCh38/hg38)
Size:
7,051 bases
Orientation:
Plus strand

Genomic View for LOC105378949 Gene

Genes around LOC105378949 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378949 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378949 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378949 Gene

Proteins for LOC105378949 Gene

Post-translational modifications for LOC105378949 Gene

No Post-translational modifications

Other Protein References for LOC105378949 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC105378949 Gene

Domains & Families for LOC105378949 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378949 Gene

Function for LOC105378949 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378949 Gene

Localization for LOC105378949 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378949 Gene

Pathways & Interactions for LOC105378949 Gene

PathCards logo

SuperPathways for LOC105378949 Gene

No Data Available

Interacting Proteins for LOC105378949 Gene

;

Gene Ontology (GO) - Biological Process for LOC105378949 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378949 Gene

Drugs & Compounds for LOC105378949 Gene

No Compound Related Data Available

Transcripts for LOC105378949 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378949 Gene

No ASD Table

Relevant External Links for LOC105378949 Gene

GeneLoc Exon Structure for
LOC105378949

No data available for mRNA/cDNA for LOC105378949 Gene

Expression for LOC105378949 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378949 Gene

Orthologs for LOC105378949 Gene

No data available for Orthologs and Evolution for LOC105378949 Gene

Paralogs for LOC105378949 Gene

No data available for Paralogs for LOC105378949 Gene

Variants for LOC105378949 Gene

Additional dbSNP identifiers (rs#s) for LOC105378949 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378949 Gene

Disorders for LOC105378949 Gene

No disorders were found for LOC105378949 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378949 Gene

Publications for LOC105378949 Gene

No publications were found for LOC105378949 Gene.

No data available for Mastermind for LOC105378949 Gene

Products for LOC105378949 Gene

Sources for LOC105378949 Gene