Aliases for LOC105378933 Gene

Data sources for LOC105378933 Gene:

RNA type for LOC105378933 Gene

lncRNA

Aliases for LOC105378933 Gene

External Ids for LOC105378933 Gene

Previous GeneCards Identifiers for LOC105378933 Gene

  • GC01U905095

Summaries for LOC105378933 Gene

GeneCards Summary for LOC105378933 Gene

LOC105378933 (Uncharacterized LOC105378933) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105378933 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378933 Gene

Genomics for LOC105378933 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105378933 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J119000 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 250.7 -0.1 -128 2.5 CEBPB MCM3 JUND PRDM10 CBX8 ARID1B ATF3 FOS RAD51 IKZF1 ENSG00000239216 LOC105378933 LOC107985191 TBX15 WARS2
GH01J118981 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 12.3 +15.2 15158 9 CBX8 ZBTB33 NRF1 L3MBTL2 RAD21 EZH2 ZNF512 POLR2A KDM1A SP1 TBX15 WARS2 LOC105378933 WARS2-AS1 HSALNG0006456 SPAG17
GH01J118958 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 11.8 +40.9 40901 3.8 SSRP1 CEBPA ATF3 YY1 HOMEZ KMT2B THAP11 FOXA2 KDM6A MAFF WARS2 WARS2-AS1 LOC105378933 TBX15 HSALNG0006456 SPAG17
GH01J118977 Enhancer 0.5 dbSUPER 11.9 +22.2 22210 3 CBX8 L3MBTL2 CHD2 EZH2 HMBOX1 WARS2-AS1 LOC105378933 WARS2 TBX15 HSALNG0006456 SPAG17
GH01J118946 Enhancer 0.8 Ensembl ENCODE dbSUPER 6.2 +53.0 52973 2.9 CEBPA NR2C1 HLF ATF3 NR2F1 CEBPG WARS2 LOC105378933 TBX15 HSALNG0006456 SPAG17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378933 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378933 Gene

Latest Assembly
chr1:119,000,343-119,001,405
(GRCh38/hg38)
Size:
1,063 bases
Orientation:
Minus strand

Previous Assembly
chr1:119,542,967-119,544,028
(GRCh37/hg19 by Entrez Gene)
Size:
1,062 bases
Orientation:
Minus strand

chr1:119,542,967-119,544,015
(GRCh37/hg19 by Ensembl)
Size:
1,049 bases
Orientation:
Minus strand

Genomic View for LOC105378933 Gene

Genes around LOC105378933 on UCSC Golden Path with GeneCards custom track
LOC105378933 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105378933 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378933 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378933 Gene

Proteins for LOC105378933 Gene

Post-translational modifications for LOC105378933 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378933 Gene

Domains & Families for LOC105378933 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378933 Gene

Function for LOC105378933 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378933 Gene

Localization for LOC105378933 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378933 Gene

Pathways & Interactions for LOC105378933 Gene

PathCards logo

SuperPathways for LOC105378933 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378933 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378933 Gene

Drugs & Compounds for LOC105378933 Gene

No Compound Related Data Available

Transcripts for LOC105378933 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105378933 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000061B7D_9606 lncRNA 655 3

Ensembl: ENST00000439394 (view in UCSC) ,

LNCipedia: lnc-TBX15-1:2,

NONCODE: NONHSAT005515.2,

URS0000A767A0_9606 lncRNA 684 1

RefSeq: NR_135034,

URS0000A7681D_9606 lncRNA 666 1

RefSeq: NR_135035,

URS00008BE3FF_9606 lncRNA 848 3

LncBook: HSALNT0013515,

LNCipedia: lnc-TBX15-1:3,

NONCODE: NONHSAT005514.2,

URS0000D5C330_9606 lncRNA 684 2

LncBook: HSALNT0013516,

LNCipedia: lnc-TBX15-1:6,

LOC105378933 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105378933 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378933 Gene

No ASD Table

Relevant External Links for LOC105378933 Gene

GeneLoc Exon Structure for
LOC105378933

Expression for LOC105378933 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378933 Gene

Orthologs for LOC105378933 Gene

Evolution for LOC105378933 Gene

ENSEMBL:
Gene Tree for LOC105378933 (if available)
TreeFam:
Gene Tree for LOC105378933 (if available)

No data available for Orthologs for LOC105378933 Gene

Paralogs for LOC105378933 Gene

No data available for Paralogs for LOC105378933 Gene

Variants for LOC105378933 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105378933 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378933 Gene

Disorders for LOC105378933 Gene

No disorders were found for LOC105378933 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378933 Gene

Publications for LOC105378933 Gene

No publications were found for LOC105378933 Gene.

No data available for Mastermind for LOC105378933 Gene

Products for LOC105378933 Gene

Sources for LOC105378933 Gene