Aliases for LOC105378927 Gene

Data sources for LOC105378927 Gene:

Subcategory (RNA class) for LOC105378927 Gene

ncRNA

Aliases for LOC105378927 Gene

External Ids for LOC105378927 Gene

Previous GeneCards Identifiers for LOC105378927 Gene

  • GC01U904278

Summaries for LOC105378927 Gene

GeneCards Summary for LOC105378927 Gene

LOC105378927 (Uncharacterized LOC105378927) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378927 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378927 Gene

Genomics for LOC105378927 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105378927 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J116877 Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas 250.7 -1.2 -1216 3.1 ZSCAN16 ZBTB10 FEZF1 MNT IKZF1 MBD2 ZNF217 SIX4 BHLHE40 ZEB1 LOC105378927 ATP1A1-AS1 MAN1A2 PTGFRN CD2 CD101 TRIM45 TTF2 piR-38129-008 lnc-PTGFRN-1
GH01J116880 Enhancer 1.2 FANTOM5 ENCODE 250.7 +1.9 1884 2.5 TBP MNT CTCF NONO ARNT REST NFATC3 NBN IRF4 ZEB2 LOC105378927 PTGFRN IGSF3 MIR320B1 CD101 RF00017-303 lnc-PTGFRN-1 CD2
GH01J116885 Enhancer 0.7 Ensembl ENCODE 0.4 +6.8 6830 1.7 ZNF341 ZNF362 ATF2 ZBTB21 ZNF629 EGR2 ATF7 ZFHX2 ZNF600 CD101 PTGFRN CD2 LINC02868 RF00017-303 LOC105378927 lnc-PTGFRN-1
GH01J116871 Enhancer 0.6 Ensembl 0.4 -8.4 -8422 1 IKZF1 RAD51 ZBTB33 ZNF664 CEBPG CEBPB HLF ZNF512 TRIM24 FOXJ2 PTGFRN LINC02868 piR-38129-008 LOC105378927 lnc-PTGFRN-1 CD2
GH01J116891 Enhancer 0.4 Ensembl 0.4 +12.0 11978 0.6 CEBPG ATF4 CEBPB ATF3 RF00017-303 CD101 LINC02868 IGSF3 MIR320B1 LOC105378927 PTGFRN CD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378927 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105378927 Gene

Latest Assembly
chr1:116,879,923-116,885,828
(GRCh38/hg38)
Size:
5,906 bases
Orientation:
Plus strand

Genomic View for LOC105378927 Gene

Genes around LOC105378927 on UCSC Golden Path with GeneCards custom track
LOC105378927 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105378927 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378927 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378927 Gene

Proteins for LOC105378927 Gene

Post-translational modifications for LOC105378927 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378927 Gene

Domains & Families for LOC105378927 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378927 Gene

Function for LOC105378927 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378927 Gene

Localization for LOC105378927 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378927 Gene

Pathways & Interactions for LOC105378927 Gene

PathCards logo

SuperPathways for LOC105378927 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378927 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105378927 Gene

Drugs & Compounds for LOC105378927 Gene

No Compound Related Data Available

Transcripts for LOC105378927 Gene

LOC105378927 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378927 Gene

No ASD Table

Relevant External Links for LOC105378927 Gene

GeneLoc Exon Structure for
LOC105378927

No data available for mRNA/cDNA for LOC105378927 Gene

Expression for LOC105378927 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378927 Gene

Orthologs for LOC105378927 Gene

No data available for Orthologs and Evolution for LOC105378927 Gene

Paralogs for LOC105378927 Gene

No data available for Paralogs for LOC105378927 Gene

Variants for LOC105378927 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105378927 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378927 Gene

Disorders for LOC105378927 Gene

No disorders were found for LOC105378927 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378927 Gene

Publications for LOC105378927 Gene

No publications were found for LOC105378927 Gene.

No data available for Mastermind for LOC105378927 Gene

Products for LOC105378927 Gene

Sources for LOC105378927 Gene