Aliases for LOC105378859 Gene

Subcategory (RNA class) for LOC105378859 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378859 Gene

  • Uncharacterized LOC105378859 3

External Ids for LOC105378859 Gene

Previous GeneCards Identifiers for LOC105378859 Gene

  • GC01U904632

Summaries for LOC105378859 Gene

GeneCards Summary for LOC105378859 Gene

LOC105378859 (Uncharacterized LOC105378859) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378859 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378859 Gene

Genomics for LOC105378859 Gene

GeneHancer (GH) Regulatory Elements for LOC105378859 Gene

Promoters and enhancers for LOC105378859 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J094329 Enhancer 0.7 ENCODE dbSUPER 750.6 +0.0 45 1.3 RAD21 CTCF MAFK PRDM1 IRF2 ZNF10 SMC3 SAP130 PRDM4 KLF16 LOC105378859 piR-31765 ARHGAP29-AS1 ABCD3 ENSG00000236098
GH01J094331 Enhancer 0.3 dbSUPER 750.6 -1.9 -1934 0.9 ZSCAN21 LOC105378859 piR-39701-003 piR-31765 ABCD3 ARHGAP29-AS1
GH01J094321 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 +4.7 4705 7.3 SIN3A SREBF1 TCF7L2 ZNF362 MNT SP1 ZBTB33 MAFK PRDM1 ZNF384 ENSG00000236098 ARHGAP29-AS1 ABCD3 ABCA4 ARHGAP29 F3 LOC105378859
GH01J094315 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 +11.7 11650 5.2 ELF3 SP1 MAFK HNF1A SP5 ZNF644 SOX13 TCF7 ZBTB48 JUND ARHGAP29-AS1 ABCA4 ENSG00000236098 lnc-ABCD3-5 LOC105378859
GH01J094309 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +19.5 19497 2.5 NR2F6 ATF1 MIXL1 HLF RERE ELF3 SP1 PPARG HNF1A ZNF644 lnc-ABCD3-5 ARHGAP29-AS1 GAPDHP29 LOC105378859
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378859 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378859 Gene

Genomic Locations for LOC105378859 Gene
chr1:94,311,301-94,330,050
(GRCh38/hg38)
Size:
18,750 bases
Orientation:
Minus strand

Genomic View for LOC105378859 Gene

Genes around LOC105378859 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378859 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378859 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378859 Gene

Proteins for LOC105378859 Gene

Post-translational modifications for LOC105378859 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378859 Gene

Domains & Families for LOC105378859 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378859 Gene

Function for LOC105378859 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378859 Gene

Localization for LOC105378859 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378859 Gene

Pathways & Interactions for LOC105378859 Gene

PathCards logo

SuperPathways for LOC105378859 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378859 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378859 Gene

Drugs & Compounds for LOC105378859 Gene

No Compound Related Data Available

Transcripts for LOC105378859 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378859 Gene

No ASD Table

Relevant External Links for LOC105378859 Gene

GeneLoc Exon Structure for
LOC105378859

No data available for mRNA/cDNA for LOC105378859 Gene

Expression for LOC105378859 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378859 Gene

Orthologs for LOC105378859 Gene

No data available for Orthologs and Evolution for LOC105378859 Gene

Paralogs for LOC105378859 Gene

No data available for Paralogs for LOC105378859 Gene

Variants for LOC105378859 Gene

Sequence variations from dbSNP and Humsavar for LOC105378859 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000255055 -- 94,310,288(-) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000303641 -- 94,323,193(-) T/C/G intron_variant
rs1000358846 -- 94,326,053(-) C/G intron_variant
rs1000366741 -- 94,317,461(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000585823 -- 94,322,098(-) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378859 Gene

Disorders for LOC105378859 Gene

No disorders were found for LOC105378859 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378859 Gene

Publications for LOC105378859 Gene

No publications were found for LOC105378859 Gene.

No data available for External Links for LOC105378859 Gene

Products for LOC105378859 Gene

Sources for LOC105378859 Gene