Aliases for LOC105378847 Gene

Subcategory (RNA class) for LOC105378847 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378847 Gene

  • Uncharacterized LOC105378847 3

External Ids for LOC105378847 Gene

Previous GeneCards Identifiers for LOC105378847 Gene

  • GC01U904521

Summaries for LOC105378847 Gene

GeneCards Summary for LOC105378847 Gene

LOC105378847 (Uncharacterized LOC105378847) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378847 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378847 Gene

Genomics for LOC105378847 Gene

GeneHancer (GH) Regulatory Elements for LOC105378847 Gene

Promoters and enhancers for LOC105378847 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J089966 Enhancer 0.3 Ensembl 750.6 -0.4 -390 0.8 NFIC LOC105378847 RN7SKP272 GEMIN8P4 ZNF326 LRRC8D lnc-GBP5-5
GH01J089973 Enhancer 0.8 ENCODE 0.4 +7.7 7667 3.4 SMARCE1 POLR2A ETV6 HLF TEAD4 MAFK CBFA2T2 SMARCA4 IKZF1 DPF2 LOC105378847 piR-33422-012
GH01J089987 Enhancer 0.9 Ensembl ENCODE 0.4 +19.5 19511 2 CTCF MIXL1 CC2D1A RAD21 ELF3 ARID2 REST TRIM22 ZNF143 RXRB RF00100-004 RN7SKP272 lnc-GBP5-12 ENSG00000272931 piR-39098-007 LOC105378847
GH01J089961 Enhancer 0.5 Ensembl 0.6 -4.7 -4691 1.4 ZIC2 POLR2A EED RUNX3 FOS RN7SKP272 GEMIN8P4 ZNF326 LRRC8D LRRC8C-DT LRRC8C LOC105378847 lnc-GBP5-5
GH01J089971 Enhancer 0.4 Ensembl ENCODE 0.6 +4.6 4585 1 ZMYM3 GEMIN8P4 ZNF326 LRRC8D LOC105378847 piR-33422-012
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378847 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378847 Gene

Genomic Locations for LOC105378847 Gene
chr1:89,967,191-89,986,800
(GRCh38/hg38)
Size:
19,610 bases
Orientation:
Plus strand

Genomic View for LOC105378847 Gene

Genes around LOC105378847 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378847 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378847 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378847 Gene

Proteins for LOC105378847 Gene

Post-translational modifications for LOC105378847 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378847 Gene

Domains & Families for LOC105378847 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378847 Gene

Function for LOC105378847 Gene

Phenotypes From GWAS Catalog for LOC105378847 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378847 Gene

Localization for LOC105378847 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378847 Gene

Pathways & Interactions for LOC105378847 Gene

PathCards logo

SuperPathways for LOC105378847 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378847 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378847 Gene

Drugs & Compounds for LOC105378847 Gene

No Compound Related Data Available

Transcripts for LOC105378847 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378847 Gene

No ASD Table

Relevant External Links for LOC105378847 Gene

GeneLoc Exon Structure for
LOC105378847

No data available for mRNA/cDNA for LOC105378847 Gene

Expression for LOC105378847 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378847 Gene

Orthologs for LOC105378847 Gene

No data available for Orthologs and Evolution for LOC105378847 Gene

Paralogs for LOC105378847 Gene

No data available for Paralogs for LOC105378847 Gene

Variants for LOC105378847 Gene

Sequence variations from dbSNP and Humsavar for LOC105378847 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000157471 -- 89,981,170(+) G/A intron_variant
rs1000292835 -- 89,981,296(+) G/A intron_variant
rs1000316449 -- 89,973,015(+) T/C intron_variant
rs1000370097 -- 89,973,478(+) G/T intron_variant
rs1000523065 -- 89,974,910(+) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378847 Gene

Disorders for LOC105378847 Gene

No disorders were found for LOC105378847 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378847 Gene

Publications for LOC105378847 Gene

No publications were found for LOC105378847 Gene.

No data available for External Links for LOC105378847 Gene

Products for LOC105378847 Gene

Sources for LOC105378847 Gene