Aliases for LOC105378842 Gene

Subcategory (RNA class) for LOC105378842 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105378842 Gene

  • Uncharacterized LOC105378842 3

External Ids for LOC105378842 Gene

Previous GeneCards Identifiers for LOC105378842 Gene

  • GC01U905168

Summaries for LOC105378842 Gene

GeneCards Summary for LOC105378842 Gene

LOC105378842 (Uncharacterized LOC105378842) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378842 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105378842 Gene

Genomics for LOC105378842 Gene

GeneHancer (GH) Regulatory Elements for LOC105378842 Gene

Promoters and enhancers for LOC105378842 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J089123 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 750.6 -1.8 -1832 7.2 ZNF24 ZBTB40 RBPJ SMARCE1 NFYC RELA HLF RAD21 DACH1 TEAD4 GBP2 ENSG00000286802 LOC105378842 piR-31470-024 GBP1 GBP7 GBP5 GBP4 GBP3 ENSG00000237568
GH01J089170 Enhancer 0.6 Ensembl 0.3 +42.7 42684 0.6 ZKSCAN8 BACH1 ZNF639 CAVIN1 ZNF740 NFE2 ZNF766 E2F5 GABPA GTF2A2 GBP7 PKN2 GBP4 GBP5 GBP1 RF00017-262 LOC105378842 lnc-PKN2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105378842 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378842 Gene

Genomic Locations for LOC105378842 Gene
chr1:89,128,417-89,179,775
(GRCh38/hg38)
Size:
51,359 bases
Orientation:
Plus strand

Genomic View for LOC105378842 Gene

Genes around LOC105378842 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378842 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378842 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378842 Gene

Proteins for LOC105378842 Gene

Post-translational modifications for LOC105378842 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378842 Gene

Domains & Families for LOC105378842 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105378842 Gene

Function for LOC105378842 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378842 Gene

Localization for LOC105378842 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378842 Gene

Pathways & Interactions for LOC105378842 Gene

PathCards logo

SuperPathways for LOC105378842 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105378842 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378842 Gene

Drugs & Compounds for LOC105378842 Gene

No Compound Related Data Available

Transcripts for LOC105378842 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378842 Gene

No ASD Table

Relevant External Links for LOC105378842 Gene

GeneLoc Exon Structure for
LOC105378842

No data available for mRNA/cDNA for LOC105378842 Gene

Expression for LOC105378842 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378842 Gene

Orthologs for LOC105378842 Gene

No data available for Orthologs and Evolution for LOC105378842 Gene

Paralogs for LOC105378842 Gene

No data available for Paralogs for LOC105378842 Gene

Variants for LOC105378842 Gene

Sequence variations from dbSNP and Humsavar for LOC105378842 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000015130 -- 89,168,178(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000076647 -- 89,145,288(+) C/T genic_upstream_transcript_variant, intron_variant
rs1000215124 -- 89,161,298(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000268674 -- 89,127,834(+) C/T upstream_transcript_variant
rs1000310604 -- 89,174,120(+) C/T genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378842 Gene

Disorders for LOC105378842 Gene

No disorders were found for LOC105378842 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378842 Gene

Publications for LOC105378842 Gene

No publications were found for LOC105378842 Gene.

No data available for External Links for LOC105378842 Gene

Products for LOC105378842 Gene

Sources for LOC105378842 Gene